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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGGGGCATGTACAGTTCTCGTACCACCAGAACTAGAGTTCCTAGTTGGGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgttctttatcccaaatgataagatacttaaaagggttttctcaacatagcttgaattgagcaacaaaaggcaggatgggattgtattttatctaatttgagatgcacaccaatggaagaataagttcgttgagtaatgctgtttaatgttgtactcactttgcag

Basic information

species Zea mays
transcript GRMZM2G179696_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179696_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g44970.1 (Oryza sativa), 5'ss of exon 2
AAAGGGGGCATGTACAGTTCTCGTACCACCAGAACTAGAGTTCCTAGTTGGGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgttctttatcccaaatgataagatacttaaaagggttttctcaacatagcttgaattgagcaacaaaaggcaggatg-ggattgtattttatctaatttgagatgcacaccaatggaagaataagttcgttgagtaatgctgtttaatgttgtactcactttgcag
  |||| |||| ||||||| |||||||| ||||||| ||||| || |||||||||||||| ||||||||||||||||||||| | |||||| | || |||||||  ||  |||    |  ||||   |   |||  |||   |||||| |   ||   ||  || |         ||  |  |||   |   ||  | | |                                                                         
GCAGGGAGCATCTACAGTTGTCGTACCATCAGAACTTGAGTTTCTTGTTGGGCCAATCTCATTCTCTGGGCCTTACTGCAAACCAAATATTCTGTTCCAGgtaactatactcta-gccgaaaatttcattctacccaaatatgttttcccctgatta-ttatatagcttctttttagtaaaaatgcaaaccctaaatcagca------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148957360|gb|EC903409.2|EC903409
EST:     GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAG                         CTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
EST: gi|22819893|gb|BU499983.1|BU499983
EST:     GGCCAATCTCGTTCTCTGGGCCTTACTGCAAACCGAATATTGTCTTTCAG                         CTGGAAGGAACAATCCTAGCTCCAACCCAGTGCTAAATCCTGGGGTTCAGG
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACAATCCTAGCTCCAACC-AGTGCTAAATCCTGGGGTTCAGG
EST: gi|87157047|gb|DY401836.1|DY401836
EST:     GGCCAATCTCGTTCTCTGGGCCTTACTGCAAACCGAATATTGTCTTTCAG                         CTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
EST: gi|87156563|gb|DY401352.1|DY401352
EST:     GGCCAATCTCGTTCTCTGGGCCTTACTGCAAACCGAATATTGTCTTTCAG                         CTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
EST: gi|148980217|gb|EE027018.2|EE027018
EST:     GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAG                         CTGGAAGGAACA
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACA
EST: gi|26560071|gb|CA832306.1|CA832306
EST:     GGCCAATCTCGTTCTCTGGGCCTTACTGCAAACCGAATATTGTCTTTCAG                         CTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC