1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTTGCTTTCAATAGCAGTATGCTCTGGGACGCCGACAAGAGGGCTCGTCAGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAGgtaaggctcctgcttatgtccctgtcgagaagttccatttatacgcgtttgctcataaaatagcctggtcaattttctttggtgacaagtgcagcagatt...
species | Zea mays |
transcript | GRMZM2G179504_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAG GCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCEST: gi|78084268|gb|DV512661.1|DV512661
genomic: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAGgtaaggctcc ... atacatacagGCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
EST: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAG GCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCEST: gi|108953809|gb|EC364899.1|EC364899
genomic: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAGgtaaggctcc ... atacatacagGCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
EST: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAG GCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCEST: gi|50332430|gb|CO527556.1|CO527556
genomic: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAGgtaaggctcc ... atacatacagGCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
EST: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAG GCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCEST: gi|76932451|gb|DV173051.1|DV173051
genomic: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAGgtaaggctcc ... atacatacagGCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
EST: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAG GCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCEST: gi|88755607|gb|DY539748.1|DY539748
genomic: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAGgtaaggctcc ... atacatacagGCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
EST: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAG GCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
genomic: AGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAGgtaaggctcc ... atacatacagGCAACAACATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCTTTCAATAGCAGTATGCTCTGGGACGCCGACAAGAGGGCTCGTCAGGCGTGGAATTACATCCGGCTGCTGGACACGGTCAGAGATGGGTTTCAGgtaaggctcctgcttatgtccctgtcgagaagttccatttatacgcgtttgctcataaaatagcctggtcaattttctttggtgacaagtgcagcagatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG