1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCAAACAAGAGCAGCCTCATGATGGTTCCCCTCCTCTGAGAGAAGATGACAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatctgccctcatcgtctctcgttgcccacatagatatgtttccatggttcttatagattcttctctatgtttgcag
species | Zea mays |
transcript | GRMZM2G179308_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGGTCAGTTTGGATGGCCATGTCTTCEST: gi|211232066|gb|FL290153.1|FL290153
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAGAAGGTCAGTTTGGATGGCCATGTCTTC
EST: CAGGKATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGGTEST: gi|211192902|gb|FL091618.1|FL091618
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAGAAGGT
EST: AGGGGATGGGCATTATGTTTTTGCYGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGCNAAAATGGGAGAAGGTCAGTTTGGATGGCCATGTCTTTEST: gi|211230015|gb|FL290150.1|FL290150
genomic: AGGG-ATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAGAAGGTCAGTTTGGATGGCCATGTCTT-
EST: CAGGGATGGGCATTATGTTTT-GCTGTTGGAGATCACCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGEST: gi|211232070|gb|FL290157.1|FL290157
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAG
EST: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGC
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAACAAGAGCAGCCTCATGATGGTTCCCCTCCTCTGAGAGAAGATGACAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatctgccctcatcgtctctcgttgcccacatagatatgtttccatggttcttatagattcttctctatgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT