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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTCTTCTGCATATTTGTGGCCAGACATCTTATCAATGACTTTCCTGATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttgttgtgctttctaaactatttctgtggaagcttgtctgaagctagttatttcatatgatagctaaatcatgttcttgataattcgatgttt...

Basic information

species Zea mays
transcript GRMZM2G179002_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179002_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g33450.2 (Oryza sativa), 5'ss of exon 3
GGTGGTCTTCTGCATATTTGTGGCCAGACATCTTATCAATGACTTTCCTGATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttgttgtgctttctaaactatttctgtggaagcttgtctgaagctagttatttcatatgatagctaaatcatgttcttgataattcgatgttt---
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ATTAGTCTTCTGTATATTTGTGGCTAGACATCTGATCAATGACTTCCCTGATCACTGGGGAGTTTCAGTTATGGTCGTAGTGGTCGTCTTCACAATATATgtaagtattgctaa--tttgctgcttctcatttttttttcttgttccctctaaattgattga-aggctgtcttagttctgctactctgaatttggttcatatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211245109|gb|FL045400.1|FL045400
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCTC
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTC
EST: gi|211338611|gb|FL266221.1|FL266221
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCT
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCT
EST: gi|148936630|gb|EC880754.2|EC880754
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: gi|91054809|gb|EB165227.1|EB165227
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: gi|211247328|gb|FL045401.1|FL045401
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGG
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGG
EST: gi|148992698|gb|EE033657.2|EE033657
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: gi|149009674|gb|EE041607.2|EE041607
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: gi|148947125|gb|EC892437.2|EC892437
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: gi|149111808|gb|EE190960.2|EE190960
EST:     ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC                         GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT