Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCTCATGAAGGCCTCATCACCTACCCGCAAAAGGCAGATCAAGGATGTCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatctgaacctatactgtatggcagaattgcacaagatgttagtgattcccattgcttcacctttgtag

Basic information

species Zea mays
transcript GRMZM2G178546_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31350805|gb|CD435162.1|CD435162
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|91871882|gb|EB401839.1|EB401839
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|31349982|gb|CD434339.1|CD434339
EST:     TCATCTGTCTTGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTCAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|19350662|gb|BM895194.1|BM895194
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|211365574|gb|FL253436.1|FL253436
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAAGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|19351740|gb|BM896272.1|BM896272
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|22491306|gb|BU051229.1|BU051229
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|149101959|gb|EE287477.2|EE287477
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|89252928|gb|DY624714.1|DY624714
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|148937901|gb|EC882124.2|EC882124
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|93281239|gb|EB673503.1|EB673503
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT