1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTGGCAGCAACCAGCAGGAACTTCAAGCAGGCAGCTAAGCTGCTGGGCCTCGACTCCAAGCTGGAGAAGAGCTTGCTCATTCCATTCAGGGAGATCAAGgtgataaatccactacagttcttttagatctggtaaactgtttcccgctgtttcacttgctcaggggggttcctgtcttcctgatgatgatgaccccccc...
species | Zea mays |
transcript | GRMZM2G178415_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGACTCCAAGCTGGAGAAGAGCTTGCTCATTCCATTCAGGGAGATCAAG GTTGAATGCACAATCCCAAAAGATGATGGAACTTTGGCATCCTATGTTGGAEST: gi|20301193|gb|BQ164136.1|BQ164136
genomic: TCGACTCCAAGCTGGAGAAGAGCTTGCTCATTCCATTCAGGGAGATCAAGgtgataaatc ... gtggttgcagGTTGAATGCACAATCCCAAAAGATGATGGAACTTTGGCATCCTATGTTGGA
EST: TCGACTCCAAGCTGGAGAAGAGCTTGCTCATTCCATTCAGGGAGATCAAG GTTGAATGCACAATCCCAAAAGATGATGGAACTTTGGCATCCTATGTTGGA
genomic: TCGACTCCAAGCTGGAGAAGAGCTTGCTCATTCCATTCAGGGAGATCAAGgtgataaatc ... gtggttgcagGTTGAATGCACAATCCCAAAAGATGATGGAACTTTGGCATCCTATGTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGCAGCAACCAGCAGGAACTTCAAGCAGGCAGCTAAGCTGCTGGGCCTCGACTCCAAGCTGGAGAAGAGCTTGCTCATTCCATTCAGGGAGATCAAGgtgataaatccactacagttcttttagatctggtaaactgtttcccgctgtttcacttgctcaggggggttcctgtcttcctgatgatgatgaccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA