Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211089362|gb|FL471083.1|FL471083EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|37381523|gb|CF627656.1|CF627656EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|166698578|gb|EG294764.1|EG294764EST: TCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: TCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|113703829|gb|EE681333.1|EE681333EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|37390184|gb|CF632319.1|CF632319EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|31910521|gb|CD651465.1|CD651465EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|166549602|gb|EG143007.1|EG143007EST: GGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|19351624|gb|BM896156.1|BM896156EST: GCCCTCGACATGAAGCTCA-GGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCG-GGTCTGCGTCACTACTGGGACCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|40336066|gb|CK370136.1|CK370136EST: GAAGCTCAGGGACCACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|87153623|gb|DY398412.1|DY398412EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGACCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|60336770|gb|DN203743.1|DN203743EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|22491168|gb|BU051091.1|BU051091EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCCCCGTGGTCTGCGTCACTACTGGGACCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|211002123|gb|FL462029.1|FL462029EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTTCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|78105880|gb|DV524298.1|DV524298EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|31910523|gb|CD651466.1|CD651466EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACNCG-GGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGC
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCAC-CGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGC
EST:
gi|45568227|gb|CK985964.1|CK985964EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|5608255|gb|AI901922.1|AI901922EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCCCCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
EST:
gi|37374390|gb|CF623548.1|CF623548EST: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
genomic: GCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
774ACAGGAAGAAGGATTACAAGGACGGAAGGTTCTCACAGGTCGTCTCCAACGCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCACACCAAGACCACTGGCAGGCGCGGAAAAACTGTTGGTGTCTCCAAGAAG
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
473ACAGGAAGAAGGATTACAAGGACGGAAGGTTCTCACAGGTCGTCTCCAACGCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCACACCAAGACCACTGGCAGGCGCGGAAAAACTGTTGGTGTCTCCAAGAAG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
432ACAGGAAGAAGGATTACAAGGACGGAAGGTTCTCACAGGTCGTCTCCAACGCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCACACCAAGACCACTGGCAGGCGCGGAAAAACTGTTGGTGTCTCCAAGAAG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
274ACAGGAAGAAGGATTACAAGGACGGAAGGTTCTCACAGGTCGTCTCCAACGCCCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgtatataatt ... tggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCACACCAAGACCACTGGCAGGCGCGGAAAAACTGTTGGTGTCTCCAAGAAG