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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCCGCGAACAGCCCCATACCTCACAGCCTCCTCATCCCCATCAGGAGGAGCCTCGCAGCGTCTCCCTACCCGCCTTCATACTTCGGCACGAGCACATgtaagccaagaaagagtggggaaccgagcgcaaaagcaaagcgaccgagagtgtgctttttgggctagcttcagttccatcatgcacatcgatatgctaaaagccgtgtcgattgtttcttttccggatcttgatttggcgctgttgcgtgttgggcgcag

Basic information

species Zea mays
transcript GRMZM2G178261_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178261_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g51970.1 (Oryza sativa), 5'ss of exon 1
---CTGGCCGCGAACAGCCCCATACCTCACAGCCTCCTCATCCCCATCAGGAGGAGCCTCGCAGCGTCTCCCTACCCGCCTTCATACTTCGGCACGAGCACATgtaagccaagaaagagtggggaaccgagcgcaaaagcaaagcgaccgagagtgtgctttttgggctagcttcagttccatcatgcac--atcgatatgctaaaagccgtgtcgattgtttcttttccggatcttgatttggcgctgttgcgtgttgggcgcag
    |||| ||||| |||||  |||| ||||||||||||||||||||||||||||||||| || ||   |||||| | ||| | ||||| ||| | ||||||||||||||||||||   |||| ||          ||||| | | |||||     |||||| | ||||    |   || ||||||| ||  ||   |||| ||||||| ||  |  |   |  | ||       |||   | |    | |   || |  ||    
TACTTGGCTGCGAATAGCCCTGTACCACACAGCCTCCTCATCCCCATCAGGAGGAGCCTCACATCG---CCCTACTCACCTGCCTACTTTGGCTCAAGCACATgtaagccaagaaa---tgggaaa--------ggaagcagatcaaccgaa----tgctttcttggctttagttcctttcatcatggactgatatttatgataaaagctgttccattccctgatcttggttgcattgcccttggttgggtttttgctttgcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211150886|gb|FL325066.1|FL325066
EST:     GAGCCTCGCTGCGTCTCCCTACCCGCCTTCATACTTCGGCACGAGCACAT                         TGGGGTGGGGCTCTTTCCAGCTGGGCTACTCCGGCAATGCGGATCTGGAGC
genomic: GAGCCTCGCAGCGTCTCCCTACCCGCCTTCATACTTCGGCACGAGCACATgtaagccaag ... ttgggcgcagTGGGGTGGGGCTCTTTCCAGCTGGGCTACTCCGGCAATGCGGATCTGGAGC