1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGCAGCAAGGAGGTAGACGAGGAGGAGGAGCCCAAGGGGTACATACACGTCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatactactatactagtgtgcagcatcgcctgcgtattttcacccaccgccatcttgctgttgacttcgtggttgtttgggccgcaacctttttgctcatcatctgttctgctgccatttccttcag
species | Zea mays |
transcript | GRMZM2G178182_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGG GTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTCEST: gi|88756498|gb|DY540639.1|DY540639
genomic: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatacta ... tttccttcagGTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
EST: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGG GTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTCEST: gi|78113320|gb|DV531712.1|DV531712
genomic: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatacta ... tttccttcagGTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
EST: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGG GTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTCEST: gi|93013083|gb|EB638603.1|EB638603
genomic: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatacta ... tttccttcagGTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
EST: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGG GTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTCEST: gi|76914768|gb|DV165681.1|DV165681
genomic: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatacta ... tttccttcagGTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
EST: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGG GTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTCEST: gi|76280841|gb|DV020409.1|DV020409
genomic: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatacta ... tttccttcagGTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
EST: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGG GTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTCEST: gi|50330951|gb|CO526077.1|CO526077
genomic: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatacta ... tttccttcagGTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
EST: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGG GTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTCEST: gi|71439158|gb|DR820208.1|DR820208
genomic: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatacta ... tttccttcagGTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
EST: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGG GTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
genomic: TCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatacta ... tttccttcagGTGAGGAGGGAGAGGATCAGCGAGAGGATGAGGGTGCTGCAGGCCCTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCAGCAAGGAGGTAGACGAGGAGGAGGAGCCCAAGGGGTACATACACGTCAGGGCAAGGAGAGGGCAAGCCACGGACAGCCACAGCCTTGCGGAGAGGgtacatactactatactagtgtgcagcatcgcctgcgtattttcacccaccgccatcttgctgttgacttcgtggttgtttgggccgcaacctttttgctcatcatctgttctgctgccatttccttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG