1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGCGATGAACAAGCTGTTGATGGAGGAGAATGACCGGCTGCAGAAGCAGGTTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctacttttctcttttcaaatgtacatgggcttgaactagaaaatggattggtttcatgatgcatggcttgctgcattttaacaaagtctgttacagtattgtttacatgcctactgtaattctttttttccctgcttatgcattatctttttctgcttgctataacatttgcttgtaaatttgcag
species | Zea mays |
transcript | GRMZM2G178102_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTEST: gi|89247876|gb|DY619662.1|DY619662
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTEST: gi|78116072|gb|DV534460.1|DV534460
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTEST: gi|148960630|gb|EE011258.2|EE011258
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTEST: gi|211350720|gb|FL043797.1|FL043797
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCCGACACA-GCTGTGAGTCTGTG-TGGACAAGGGEST: gi|149110140|gb|EE293958.2|EE293958
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACC-GACACAAGCTGTGAGTCTGTGGTG-ACAAGTG
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTEST: gi|148999153|gb|EE036067.2|EE036067
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTEST: gi|71315093|gb|DR794175.1|DR794175
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTEST: gi|148972955|gb|EE023980.2|EE023980
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
EST: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGT CCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
genomic: TTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctact ... aaatttgcagCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGATGAACAAGCTGTTGATGGAGGAGAATGACCGGCTGCAGAAGCAGGTTTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTgtgagctacttttctcttttcaaatgtacatgggcttgaactagaaaatggattggtttcatgatgcatggcttgctgcattttaacaaagtctgttacagtattgtttacatgcctactgtaattctttttttccctgcttatgcattatctttttctgcttgctataacatttgcttgtaaatttgcag
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