Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgcagactactacaacactggttgcattgttttcttcccgcacacaaactgcttggcgctttgttttgcttgattatgcttggttctaattgtgctttcttttactcttgtatgcag

Basic information

species Zea mays
transcript GRMZM2G177720_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177720_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G00590.1 (Glycine max), 5'ss of exon 2
CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgcagactactac--aacactggttgcattgttttcttcccgcacaca---aactgcttggcgctttgttttgcttgattatgcttggttctaattgtgctttcttttactcttgtatgcag
 || ||| ||||||| ||||| || || || ||||||||||||||| | || || ||||| ||||| || ||||||||||| || || || || || ||||| |      |  |||   |  | || |     | |||  ||  ||   || | |   | ||  ||    |||||   | | | |  | || ||  | |                              
GAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTACTACCCTCAAGACAGgtaaccttaaaacctaaccctgatcaatcacacctttgcctttgtcttccatatagttacctctttaattctttgcaatacattacaaagcatgagtatt-----------------------------

upper sequence: GRMZM2G177720_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G38520.1 (Glycine max), 5'ss of exon 3
CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgcagactactacaacactggttgcattgttttcttcccgcacacaaactgcttggcgctttgttttgcttgattatgcttggttctaattgtgctttcttttactcttgtatgcag
 ||||| || ||||||||||| || || || || || || |||||| ||||||| ||||| ||||| || |||||||| ||||| ||||| || || ||||| |||    ||     |    ||     |    |||  | |   |  |  ||   | ||  |  |||| |    |   || | |   |||  ||  | ||                       
GAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCGTTTTGATGTCGGCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagtt-aaagttatttttttcatacccttttgtgtgctgtgttcaaatgcatgtttctatgaactttatac-acaccatgaggtgaggtcttacatttgt----------------------

upper sequence: GRMZM2G177720_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G45060.1 (Glycine max), 5'ss of exon 3
CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgcagactactacaacactggttgcattgttttcttcccgcacacaaactgcttggcgctttgttttgcttgattatgct-tggttctaattgtgctttcttttactcttgtatgcag
 || || |||||||| ||||| || || || ||||||||||||||| |||| || ||||| ||||| || ||||||||||| ||||| || || || ||||| |   |  |  | |   |        |  ||    |||      ||    |||||   ||  | | ||   ||  |  | ||| | || ||   | ||  ||                     
GAATGGCAGGCTGAATAAGTGTGGGGTTATAAGCCCTCGCTTTGATGTCGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTGCTTCCCTCAAGACAGgtaacatcaaaacccaaccctgt-tcaatcacac--ctttgcatatgctattaaactttgtgttg-tatgaactgtcttttaatggtatgtttgggagtggact---------------------

upper sequence: GRMZM2G177720_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G00600.2 (Glycine max), 5'ss of exon 3
CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgcagactactacaacactggttgcattgttttcttcccgcacacaaactgcttggcgctttgttttgcttgattatgcttggttctaattgtgctttcttttactcttgtatgcag
 || ||| ||||||| ||||| || || || ||||||||||||||| | || || ||||| ||||| || ||||||||||| || || || || || ||||| |      |  |||   |   |   ||  ||   ||  |||   |    | |  |  ||  | ||||  ||   |  | ||  ||       |   ||  |                     
GAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTACTACCCTCAAGACAGgtaaccttaaaacctaaccctg-atcagtcacacctttgcctt--tgtcttccatatagttacctctttaattctttgcaatacactacaaagcatgagtatt---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29131046|gb|CB381750.1|CB381750
EST:     GCGTGAAAGACCTTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCCCGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|4753545|gb|AI657455.1|AI657455
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|14701336|gb|BI233754.1|BI233754
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|87152142|gb|DY396931.1|DY396931
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|71448099|gb|DR829149.1|DR829149
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|113646309|gb|DW802681.1|DW802681
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTC
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTC
EST: gi|211249523|gb|FL044497.1|FL044497
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGA
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGA
EST: gi|113615080|gb|DW779876.1|DW779876
EST:     TGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: TGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|31997995|gb|CD661867.1|CD661867
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|33095780|gb|CF055774.1|CF055774
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|113612542|gb|DW774594.1|DW774594
EST:     GGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|9255183|gb|BE345651.1|BE345651
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|166603481|gb|EG243978.1|EG243978
EST:     GATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCAATGGACCACGAGGA
genomic: GATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCA-TGGACCACGAGGA
EST: gi|29544673|gb|CB605053.1|CB605053
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|31611995|gb|CD568617.1|CD568617
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|29130978|gb|CB381682.1|CB381682
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCCCGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211522808|gb|FL109130.1|FL109130
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211388783|gb|FL109051.1|FL109051
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|9794512|gb|BE552820.1|BE552820
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGGCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|4886089|gb|AI677209.1|AI677209
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|9824874|gb|BE575181.1|BE575181
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|31358492|gb|CD442849.1|CD442849
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|32846189|gb|CD985870.1|CD985870
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|166607468|gb|EG251111.1|EG251111
EST:     TGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: TGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|32865268|gb|CF004950.1|CF004950
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|166560619|gb|EG273891.1|EG273891
EST:     ATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: ATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|22491237|gb|BU051160.1|BU051160
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211270075|gb|FL108984.1|FL108984
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|12970751|gb|BG267140.1|BG267140
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211394053|gb|FL109083.1|FL109083
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|15632344|gb|BI679437.1|BI679437
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTACTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|14621511|gb|BI142272.1|BI142272
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211525823|gb|FL109152.1|FL109152
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|40337348|gb|CK371418.1|CK371418
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|89250090|gb|DY621876.1|DY621876
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|60394062|gb|DN226932.1|DN226932
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|101392168|gb|EB818012.1|EB818012
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|33101061|gb|CF061021.1|CF061021
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|40336875|gb|CK370945.1|CK370945
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211525824|gb|FL109153.1|FL109153
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGGATACATCGTCCTCACAACTTCGGCAGGCATCATGG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGG-ATACATCGTCCTCACAACTTCGGCAGGCATCATGG
EST: gi|29544365|gb|CB604745.1|CB604745
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211525816|gb|FL109145.1|FL109145
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|31997991|gb|CD661866.1|CD661866
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211519801|gb|FL109121.1|FL109121
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|60396424|gb|DN229293.1|DN229293
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|28910930|gb|CB331686.1|CB331686
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCCGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCCCGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|60396127|gb|DN228996.1|DN228996
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|32944735|gb|CF049554.1|CF049554
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|9952453|gb|BE639036.1|BE639036
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|213175371|gb|FM190166.1|FM190166
EST:     GCGTGAAAGACATCGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACGACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|37399382|gb|CF637018.1|CF637018
EST:     AGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: AGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211386149|gb|FL109037.1|FL109037
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211391424|gb|FL109066.1|FL109066
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|14701335|gb|BI233753.1|BI233753
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|211386160|gb|FL109048.1|FL109048
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGSTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGA
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGA
EST: gi|37394128|gb|CF634335.1|CF634335
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|101392170|gb|EB818013.1|EB818013
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|60339757|gb|DN206730.1|DN206730
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTAGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|29945118|gb|CB815478.1|CB815478
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|9953673|gb|BE640256.1|BE640256
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|14883485|gb|BI273372.1|BI273372
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|14243692|gb|BG841342.2|BG841342
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
EST: gi|60341292|gb|DN208265.1|DN208265
EST:     GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAG                         TTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG
genomic: GCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 287

CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAGGCCCGCCGGAAGAGCGTAGGAGGCAAGGTTCTAGGTTTCTTCTATTGAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 162

CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAGGCCCGCCGGAAGAGCGTAGGAGGCAAGGTTCTAGGTTTCTTCTATTGAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 82

CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAGGCCCGCCGGAAGAGCGTAGGAGGCAAGGTTCTAGGTTTCTTCTATTGAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 73

CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgc ... ttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAGGCCCGCCGGAAGAGCGTAGGAGGCAAGGTTCTAGGTTTCTTCTATTGAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCGCTTTGATATCGGCGTGAAAGACATTGAGGGATGGACTGCAAGGCTGCTCCCGTCCAGGCAGgttagtccgcagactactacaacactggttgcattgttttcttcccgcacacaaactgcttggcgctttgttttgcttgattatgcttggttctaattgtgctttcttttactcttgtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT