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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAGGATGTGTTGATGCATGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTATTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgttgaattttgtattcatcctagacacaatgtctactattttcatccag

Basic information

species Zea mays
transcript GRMZM2G177485_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177485_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 5'ss of exon 7
CTCAAAGGATGTGTTGATGCATGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTATTAGAAAAGgtttcttctgcagatt---tatgattt----ttattccataagttgttgaattttgta-ttcatcctagac-----acaatgtctactattttcatccag
||||||||||||| | ||||  |||||| | |||||| | ||||||||||||||||   |||||||||||  |||| ||||||   ||| ||||    | |||  |      | ||  || |  | ||||| ||||||      || |    ||| ||||  || ||
CTCAAAGGATGTGCTTATGCGCGTTGTGACACAAAATCTCTCTCCTGAGTTAACTCATGTAGAAAAGgttgtttctccagattgaatattattttaaatgatttaaactaccgatgggttatacaattcattctagactaacagcattactcactgttttgctcaag

upper sequence: GRMZM2G177485_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 7
CTCAAAGGATGTGTTGATGCATGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTATTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgt-----tgaattttgtattcatcctagacacaatgtctactattttcatccag--------------------------------------------------------------
 ||||||||  |  | |||| ||||||||| |||||| ||||||||||||| |||||  | |||||||||  |  | |   || || |||| | ||    ||||        || |    |  |   |   |||     | |||  | |||   ||                                                                 
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttctttttaat-atttgttttttggaagtgacatgagtggaaagagggtcattgtgagaggtcctttcttttgtttggttctgattttttgctaagtattcagaactgagttgattttctacttgattcttccctttctcacgtag

upper sequence: GRMZM2G177485_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
CTCAAAGGATGTGTTGATGCATGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTATTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgttgaattttgtat----tcatcctagacacaatgtctactattttcatccag--------------------------------------------------------------
 ||||||||  |  | |||| ||||||||| |||||| ||||||||||||| |||||  | |||||||||  |  | ||  || || |||| | ||    ||||   |  | |    |     || |  |        | |||  | |||   ||                                                                 
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaat-atttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag