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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAATCTGGTCAGATTAATTGGCTATTGTGCAGATGGTGACCAGCGCCTCTTAGTTTACGAATATATGTTGTTGGGATCACTGGAAAATCGTCTGTTTGgtaagttgcacacttacaccatagtatagcaattgctaaaattgaagatttccctaggatccaaaatgctaatatttctcttggcttcagtttacatttt...

Basic information

species Zea mays
transcript GRMZM2G177061_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177061_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g47270.1 (Oryza sativa), 5'ss of exon 3
CCTAATCTGGTCAGATTAATTGGCTATTGTGCAGATGGTGACCAGCGCCTCTTAGTTTACGAATATATGTTGTTGGGATCACTGGAAAATCGTCTGTTTGgtaagttgcacacttacaccatagtatagcaattgctaaaattgaagatttccctaggatccaaaatgctaatatttctcttggcttcagtttacatttt--
|||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||| || |||||| | ||||| ||||| ||||| | |||   ||||||| | | || ||    |   ||      | || |  | || ||  ||| |  |  ||| | ||  ||  || ||   |  ||||||  | ||||     
CCTAATCTGGTCAGATTAATTGGCTACTGCGCAGATGGTGACCAGCGGCTCCTAGTTTATGAGTATATGCTATTGGGGTCACTAGAAAACCATCTTCATGgtaagcttctcagttctcactacgtgattttactgtttcagttcaaagtttgcacattatcaataacact--tagttgattgagcttcacataacatacaga