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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtaccactactcctgcaccccccacttgcgcattcacgtatcactcgctcagatctcggagctcccgttccagatctcgccatccctccgccccg...

Basic information

species Zea mays
transcript GRMZM2G176612_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176612_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g63710.1 (Oryza sativa), 5'ss of exon 2
CCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtaccactactcctgcac-cccccacttgcgcattcacgtatcactcgctcagatctcggagctc-ccgttccagatctcgccatccctccgccccg
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  | | | ||  | ||| | |  ||| |    |||   | |   ||||  | || |   || |  | | || |  ||       || | ||||  |    
CCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCCGCCGTCCACCGCAGCCTCGGCGTCCACATCACCTTCGTCAGgtttctttctacccccccttcccatcccgatccacgccccctcccctcacaagatctgcaatccgcccacgccatcacatccgattcctttcctcatctt--

upper sequence: GRMZM2G176612_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G12340.1 (Glycine max), 5'ss of exon 2
CCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtaccactactcctgcaccccccacttgcgcattcacgtatcactcgctcagatctcggagctc----ccgttccagatctcgccatccctccgccccg
| |||||||| |||||||| |||||||| || || |||||||||||| |||| ||||||||||  |||||||| ||||| || ||||||| |||||| ||| |   |    ||  |  ||        | | | | ||     | |   |   | |  |   | |  |     | |||    || |     |    | |   | 
CGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGgcaagtttttgctgattttgt----ttgaatggtgaatctgtttgttgattttttatgtgcggaaatttgtatcggtttgcaatatgattgtgtggctgattct

upper sequence: GRMZM2G176612_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G12340.2 (Glycine max), 5'ss of exon 2
-----CCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtaccactactcctgcaccccccacttgcgcattcacgtatcactcgctcagatctcggagctcccgttccagatctcgccatccctccgccccg-
     | |||||||| |||||||| |||||||| || || |||||||||||| |||| ||||||||||  |||||||| ||||| || ||||||| |||||| ||| |   |    ||  |  ||        | | | | ||     | |   |   | |  |   | |  |   ||  | | |  |   ||   |  |   |  
CAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCgtgaggcaagtttttgctgattttgt----ttgaatggtgaatctgtttgttgattttttatgtgcggaaattt--gtatcggtttgcaatatgattgtgtggctg

upper sequence: GRMZM2G176612_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv02s0012g01330.t01 (Vitis vinifera), 5'ss of exon 2
CCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgt--accactactcctgcaccccccacttgcgcattcacgtatcactcgctcagatctcggagctcccgttccagatctcgccatccctccgccccg
| |||||||| || ||||| |||||||| || || |||||||||||| |||||||||||||||  ||  | || || ||||| ||||||| |||||||||||    |  |     | |  ||        |     |  ||   || |     | |||  |    ||  |    || |   |   |   |   |        
CGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGGTTCACATCAGCTTCGTCAGgtgatttcaattttgagttttggtggtttgatccatgatttagggttttggcagttcaatttggtgatttgatatttcgactagggttttgatttaagat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50325053|gb|CO520179.1|CO520179
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|50324070|gb|CO519196.1|CO519196
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|26456800|gb|CA828383.1|CA828383
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|26559842|gb|CA832077.1|CA832077
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|20506864|gb|BQ279378.1|BQ279378
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|91875558|gb|EB405515.1|EB405515
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|211533911|gb|FL193997.1|FL193997
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|71325907|gb|DR799636.1|DR799636
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|148971581|gb|EE022297.2|EE022297
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|93015029|gb|EB640549.1|EB640549
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|149103312|gb|EE288690.2|EE288690
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|148962572|gb|EE013450.2|EE013450
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|101384752|gb|EB814422.1|EB814422
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|22819543|gb|BU499633.1|BU499633
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|31355549|gb|CD439906.1|CD439906
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|148950095|gb|EC895631.2|EC895631
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|78119544|gb|DV537928.1|DV537928
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACT
EST: gi|87157844|gb|DY402633.1|DY402633
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|149074062|gb|EE162404.2|EE162404
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|60395607|gb|DN228477.1|DN228477
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: gi|71317539|gb|DR795496.1|DR795496
EST:     GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG                         GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT