Sequence
atgc intronic sequence ATGC exonic sequenceGCCAAAAGAACAAGAGTTACAAAGCGCTAATTGCTCGTCGAAGAGATTTTATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAGgtatgtcctaaaaaaatctactcaaatggaagctatttatatatttaagtactattccaaatgaaatttattatgtatgaaattcagaccattctcattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G176542_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os01g67420.1 (Oryza sativa), 5'ss of exon 12
GCCAAAAGAACAAGAGTTACAAAGCGCTAATTGCTCGTCGAAGAGATTTTATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAGgtatgtcctaaaaaaatctactcaaatggaagctatttatatatttaagtactattccaaatgaaatttattatgtatgaaattcagaccattctcattt--
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GTCGCAAGAACAAGAGTTACAAAGCATTTATAGCCAATCGACAAGATTTTATGGACCTTGTTGTTACACCTCGTATGTTCCTTGATCATCTTCCATGGAGgtatatcttgagaac-tctgctcaaaccata-ttatgttgaaactcgttagctttaagggttgtatttctgtgccattcatactaagaataccttcagagta
upper sequence: GRMZM2G176542_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT1G05790.2 (Arabidopsis thaliana), 5'ss of exon 13
GCCAAAAGAACAAGAGTTACAAAGCGCTAATTGCTCGTCGAAGAGATTTTATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAGgtatgtcctaaaaaaatctactcaaatggaagctatttatatatttaagtactattccaaatgaaatttatt---atgtatgaaattcagaccattctcattt
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GTGATGTGACGGATGGTTACAAAGCTTATGTTGCAAACAGAGAGAGCTTCAAAGAAATTATGGTTTCTCCATCAATGTTCCTTGATCATCTTCCTTGGAGgtaactctctaaaaca-caactttgat----ttttttaagtcaaaacagagcctctctgaatcattgctactgcaatttattgacttcag-------------
upper sequence: GRMZM2G176542_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv05s0124g00200.t01 (Vitis vinifera), 5'ss of exon 7
GCCAAAAGAACAAGAGTTACAAAGCGCTAATTGCTCGTCGAAGAGATTTTATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAGgtatgt---cctaaaaaaatctactcaaatgg---aagctatttatatatttaagtactattccaaatgaaatttattatgtatgaaa-ttcagaccattctcattt-------
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AAGAGAAGGCACCGAGCTATAAAGCATATATATCAGATAGAGAAAGGTTCAAGGATATCATTGTTTCACCATCTATGTTCCTTGACCATCTCCCTTGGAGgtatctgaactcacttgtactttccatagttgtttaaactgtttgca-acataggaacttgacagaaaagtatacacctgatgccattctttcgaccaaattcatgttttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76290975|gb|DV030543.1|DV030543EST: ATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAG GTGCCACTATGCCATGCAAAAGGTCATAGAAACACGAAAACGGGATCAGCT
genomic: ATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAGgtatgtccta ... tggtttgtagGTGCCACTATGCCATGCAAAAGGTCATAGAAACACGAAAACGGGATCAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCAAAAGAACAAGAGTTACAAAGCGCTAATTGCTCGTCGAAGAGATTTTATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAGgtatgtcctaaaaaaatctactcaaatggaagctatttatatatttaagtactattccaaatgaaatttattatgtatgaaattcagaccattctcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa