Sequence
atgc intronic sequence ATGC exonic sequenceGTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 5'ss of exon 2
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttat-ttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactg----atcattttgaactgat-cacag
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GTCTAGTGGTCTGCGGGAAGAGATGTGATTCTGTTGGCATCCCAGCACTCAGTTCTTCATTAAATCTTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatttgcataatctgt---ttgtattgttgt-----tgttttgacgtatatctcgtgttcaaaataa-atatatgcatttcattccctctttattaattgagagcagttttattttgaaatgattcacag
upper sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G02600.5 (Glycine max), 5'ss of exon 2
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctc--gtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag
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GGAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaa----tgtcta--gttttgttattactttaccgcaagctttatgctt-ttttgcagacccttaatttgttgtttgtatgattttgagtttccatgcag--------------------
upper sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G10260.1 (Glycine max), 5'ss of exon 4
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag
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-GAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtcta---gttttgttattacttgaccg-caagctttatgctt-ttttgtagacccttaatttgttgtttgtatgattttgagtttccatgtag--------------------
upper sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 2
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgca-tattttgtccattattttgttgtctacttgtct-cgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag
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GCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattt---tgagtttccttgcag--------------------------
upper sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 5'ss of exon 2
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag
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GTAGATTAGTCTGCGGAAAGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATTgtgagtacattatttttttattgtgttatggagtta-cagtctgctacaatagattttgatattg---acattgttctcgtaactt-tgcag--------------------------------------
upper sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0026g01590.t01 (Vitis vinifera), 5'ss of exon 3
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttatttttgtgttgaaaacattgtatgtc--caattcatgcgtgcttcattattaaactgatcattttgaactgatcacag
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GCAAATTGGTCTGCGAAAAGAGATGCACCTTATCTGGAATTGGCCTCCTTGGTGCTTCCTTAATTATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagtt-tttacaattcctaa-----atttcttttaccatagatgtcaatatagtgtt----tgaagatggttaatgtcttcgccttatgcatcccacaacatatatgtgttgctcttgcag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166680836|gb|EG140230.1|EG140230EST: CAAACAGAGCTTTGTATT GACTGACTCCCGCTTGCCTGACATGCCAATTATTTATGCTAGTGATGCTTT
genomic: CAAACAGAGCTTTGTATTgtgagttatt ... ctgatcacagGACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT