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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCGGCGGCGGCTGCTGCTGCCGGCCATAAGACCGACTACATCCACGTCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaacagctgagttactgggcaaacatctttgcgcgcgtgccccatggtccatgctgctcgtgggcaccgatagatcgacccgacctgcggcgtgcattagagctcatggccgaacgaactgacgtacag

Basic information

species Zea mays
transcript GRMZM2G176289_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176289_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g47660.1 (Oryza sativa), 5'ss of exon 2
GGCGGCGGCGGCGGCTGCTGCTGCCGGCCATAAGACCGACTACATCCACGTCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaacagctgagttactgggcaaacatctttgcgcgcgtgccccatggtccatgctgctcgtgggcaccgatagatcgacccgacctgcggcgtgcattagagctcatggccgaacgaactgacgtacag
| |  ||||| || | |   | |||||||| ||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||| ||||||     | |  |   | | |||  |   |||||  |||    ||   |  ||     |||   ||  | ||  |  | | |         |  |  |                                     
GACCTCGGCGTCGACGGTGACCGCCGGCCAGAAGACCGACTACATCCACGTCAGAGCCCGCCGTGGGCAGGCCACGGACAGCCACAGCCTCGCCGAACGGgta-cgccaccgccattgatcctg--cctccatctc-gcgtctttgttgcgaggcgagagctaa-cgacgacatggccaaaactgttatttttttgcag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78112534|gb|DV530928.1|DV530928
EST:     TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGG                         GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
genomic: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tgacgtacagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
EST: gi|149112481|gb|EE295353.2|EE295353
EST:     TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGG                         GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
genomic: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tgacgtacagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG