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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacggattctcaaactttgttccattcgctacgcttgttggctttagtggttccttagctagttcgattagttcagctgtggacagtacattttgctgt...

Basic information

species Zea mays
transcript GRMZM2G175510_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G175510_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g34690.1 (Oryza sativa), 5'ss of exon 2
AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgt----acggattctcaaactttgttccattcgctacgcttgttggctttagtggttccttagctagttcgattagtt-cagctgt-ggacagtacattttgctgt
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AGGACTCGCTGAAGCGGGAGTCCGGCACGAAGGTTCACCATGCCAACATCCAGGCCGCCAAGgtgaggacagactcttataagct-ttttatatactgtctagatgtggtgaagttgttttttttattgtactgtaggtgataattatcacacagt-caattag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32798447|gb|CD950683.1|CD950683
EST:     AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCTAACATCCAGGCGGCCAAG                         GCTGTTGCTGACAGCATTC
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacggattc ... ttcttcacagGCTGTTGCTGACATCATTC