Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGATGATCGCTATGGGAATACACGCTTGTATGTTGGAAGATTGTCTCCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatcacattatatgcacatagaactattctgaaactcagagtgtgctggcgtgctgctttttgttatgtggtcggacaccagttatgctctacta...

Basic information

species Zea mays
transcript GRMZM2G175419_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37421775|gb|CF648589.1|CF648589
EST:     CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG                         AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: gi|78109291|gb|DV527707.1|DV527707
EST:     CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG                         AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: gi|15208745|gb|BI430629.1|BI430629
EST:     CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGAAG                         AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: gi|21809627|gb|BQ667945.1|BQ667945
EST:     CCCCGCACCCG-TCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG                         AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: gi|76290330|gb|DV029898.1|DV029898
EST:     CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG                         AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: gi|32795893|gb|CD948129.1|CD948129
EST:     CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG                         AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: gi|60354503|gb|DN221476.1|DN221476
EST:     CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG                         AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: gi|94473189|gb|EB702147.1|EB702147
EST:     CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG                         AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT