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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatgaagtgcttctttccgttgggacacaatcaattggtttccgacgaattagcgcatgctattggttcatcttgttaatttttgtttctctcaa...

Basic information

species Zea mays
transcript GRMZM2G174990_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174990_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g46720.2 (Oryza sativa), 5'ss of exon 1
---TTGCAGGCGATTCTGAGCTCGGG--TTTTGTTCCGGGGACGGATTCCTGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatgaagtgcttctttccgttgggacacaatcaatt--ggtttccgacgaattagcgcat-gctattggttcatcttgttaatttttgtttctctcaa
   ||   |  |||| | || | ||   ||||| || || ||  ||||   |   ||| ||| ||||||||||| || ||||| |||||||| |||||||||||||| ||| | ||          |     |  |  |||   |     || ||||      || |   ||   | |    ||||  || || ||  ||   
TAGTTCTTGTGGATTTTTAGGTTGGAGCTTTTGCTCGGGCGATTGATTTTGGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacgaattactaggaaatagagtatttctttgcatttaagaccaggatgaatcgatttattgggcttaaattagtgggttatcttgtgattacct---

upper sequence: GRMZM2G174990_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g46720.1 (Oryza sativa), 5'ss of exon 2
TTGCAGGCGATTCTGAGCTCGGG-TTTTGTTCCGGGGACGGATTCCTGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatgaagtgcttctttccgttgggacacaatcaatt--ggtttccgacgaattagcgcat-gctattggttcatcttgttaatttttgtttctctcaa
                | | | | ||||| || || ||  ||||   |   ||| ||| ||||||||||| || ||||| |||||||| |||||||||||||| ||| | ||          |     |  |  |||   |     || ||||      || |   ||   | |    ||||  || || ||  ||   
----------------GTTGGAGCTTTTGCTCGGGCGATTGATTTTGGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacgaattactaggaaatagagtatttctttgcatttaagaccaggatgaatcgatttattgggcttaaattagtgggttatcttgtgattacct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101402477|gb|EB822801.1|EB822801
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|211480226|gb|FK977831.1|FK977831
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|60338296|gb|DN205269.1|DN205269
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|31997893|gb|CD661823.1|CD661823
EST:     GGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: GGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|1590775|gb|AA072437.1|AA072437
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|149084713|gb|EE174205.2|EE174205
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|161586771|gb|EY951293.1|EY951293
EST:     CGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: CGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|211483108|gb|FK977835.1|FK977835
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|71426247|gb|DR807297.1|DR807297
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|211480223|gb|FK977828.1|FK977828
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|28931255|gb|CB334616.1|CB334616
EST:     CCTCTCGA-CGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: CCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|211483115|gb|FK977842.1|FK977842
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|101386148|gb|EB815117.1|EB815117
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|31611997|gb|CD568619.1|CD568619
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: gi|101402741|gb|EB822898.1|EB822898
EST:     TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT                         GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG