1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGCTTGGTTATGAAGGCCTTGAAGTTATTAACCCCGATGGAGGCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagatttgaatcatcatcaaatagtgtattgctagaaagtcatgagaacaaattttatttgacaatacttccaaattgagggtgttctgcatgga...
species | Zea mays |
transcript | GRMZM2G174644_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTEST: gi|211272002|gb|FK970185.1|FK970185
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG GACCGTGATAGCTACTGGAAGATGATGCACAAATEST: gi|211271996|gb|FK970179.1|FK970179
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAAT
EST: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG GAC-GTGATAGCTACTGGAAGATGATGCACAAATACATAGEST: gi|211271999|gb|FK970182.1|FK970182
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAG
EST: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTEST: gi|211271998|gb|FK970181.1|FK970181
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTEST: gi|211272003|gb|FK970186.1|FK970186
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG GACCGTGATAGCTACTGGAAGATGATTGCACAAATACATAGGATCAGATGTEST: gi|149009147|gb|EE041283.2|EE041283
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGAT-GCACAAATACATAGGATCAGATGT
EST: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTEST: gi|18659308|gb|BM500269.1|BM500269
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG GACCGTGATAACTACTGGAAGATGATGCACAAATACATANGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTTGGTTATGAAGGCCTTGAAGTTATTAACCCCGATGGAGGCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagatttgaatcatcatcaaatagtgtattgctagaaagtcatgagaacaaattttatttgacaatacttccaaattgagggtgttctgcatgga
- - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaacaaa