Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGACTGGTGGCGCGACGTCAACGAGTCGCCGCTGTGGCAGGACCGCATCTTCCACGCGCTCGCCGTGCTCTACGGCATCGTCTCCGCCGTCGCGCTGgtaagcaccccacccccgcgcccccttccctgcccgatcctcgtctggtccgatctatcagaattgcgcgagccgcgaggggatgtgattttctgtcggt...

Basic information

species Zea mays
transcript GRMZM2G174286_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 5'ss of exon 1
CGTGGACTGGTGGCGCGACGTCAACGAGTCGCCGCTGTGGCAGGACCGCATCTTCCACGCGCTCGCCGTGCTCTACGGCATCGTCTCCGCCGTCGCGCTGgtaagcaccccacccccgcgcccccttccctgcccgatcctcgtctggtccgatctatcagaattgcgcgagccgcgaggggatgtgattttctgtcggt
 |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||  ||||| | |||||||||| ||||||||||| ||||||||||| || |||  | ||| |  ||| | |  | |   |   ||    |   |    | | |    |  | |      |    |||  | |||||| |   |
GGTGGACTGGTGGCGCGACGTGAACGAGTCGCCGGTGTGGCAGGACCGCATCTTCCACGTCCTCGCGGCGCTCTACGGCTTCGTCTCCGCCATCGCGCTGgtaggcgcccgccaccctccacccttccattacgttacgatctgtggaggctggatctgattgctcagtggtatctgttttgattgggttttcttttttt

upper sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 1
CGTGGACTGGTGGCGCGACGTCAACGAGTCGCCGCTGTGGCAGGACCGCATCTTCCACGCGCTCGCCGTGCTCTACGGCATCGTCTCCGCCGTCGCGCTGgtaagcaccccacccccgcgcccccttccctgcccgatcctcgtctggtccgatctatcagaattgcgcgagccgcgaggggatgtgattttctgtcggt
|    |||||||||| ||| |||||   || ||||| |||||||| ||||||||||||   ||| || | |||||||| |||||| |||||||||| || ||| | || ||    ||||  |   || |     | |    |||  ||       |  ||    |    ||           || ||||  | | | |  
CTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATCTTCCACCTCCTCTCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTAgtacg-acgccgtttccgc--cagatttctatttccacttccgttagggtttcctttccaattatttatgatatttttaataatatgatgattt-tag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67017793|gb|CO446542.1|CO446542
EST:     TCTTCCACGCGCTCGCCGTGCTCTACGGCATCGTCTCCGCCGTCGCGCTG                         GTCCAATTGATCAGAATCGAGTGCAGGGTGCCAGAGTATGGGTGGACGACG
genomic: TCTTCCACGCGCTCGCCGTGCTCTACGGCATCGTCTCCGCCGTCGCGCTGgtaagcaccc ... tctcttgtagGTCCAATTGATCAGAATCGAGTGCAGGGTGCCAGAGTATGGGTGGACGACG