1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgactgagatgttttaatgaatgtggatcttggttaccgtatatctgccatgccaatatctttatatgctttgtggaactgtgatgtgctactga...
species | Zea mays |
transcript | GRMZM2G174204_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|60354693|gb|DN221666.1|DN221666
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|60347312|gb|DN214285.1|DN214285
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTTGTTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|50332540|gb|CO527666.1|CO527666
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|45847152|gb|CN071095.1|CN071095
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|211523708|gb|FL481391.1|FL481391
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: CTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|60350420|gb|DN217393.1|DN217393
genomic: CTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|211296298|gb|FL480002.1|FL480002
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|78109119|gb|DV527536.1|DV527536
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|5739867|gb|AI947557.1|AI947557
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: GGCAAGCGAAAAC CCAACCAGTGGAAGAGAATGGTTNCCAAAGCCNCTTTTGTTGGAGCTGGATEST: gi|60353886|gb|DN220859.1|DN220859
genomic: GGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|17930472|gb|BM267432.1|BM267432
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATEST: gi|45847376|gb|CN071319.1|CN071319
genomic: TGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
EST: GCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCCAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
genomic: GCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgact ... ccctgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAAgtaagtgactgagatgttttaatgaatgtggatcttggttaccgtatatctgccatgccaatatctttatatgctttgtggaactgtgatgtgctactga
- - - - - - CTGAAG
- - - - - - - TGAAGA
- - - - - - - - AAGAAG
- - - - - - - - - AAGAAA