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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCACCAGAAGCGCCATGGCAAGCGCCTGGACCACGAGGAGCGCAAGCGCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttctgatctgataacaagtttacgcccttttcggctttgctgttcatgtgcgcctgttgttgatgatcacgtgccttgtgctgctgcag

Basic information

species Zea mays
transcript GRMZM2G174204_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174204_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 2
GCTTCACCAGAAGCGCCATGGCAAGCGCCTGGACCACGAGGAGCGCAAGCGCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttctgatctgataacaagtttacgcccttttcggctttgctgttcatgtgcgcctgttgttgatgatcacgtgccttgtgctgctgcag
||||||||||||||||||||||  |||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||| || | ||| |||||  | ||| |   ||| |   ||  |       |  | | |      ||  | ||  || |   |||||| |||||  | || |  |||| |||  ||||
GCTTCACCAGAAGCGCCATGGCCGGCGCCTGGACTACGAGGAGCGCAAGCGCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagactgtttatattccccccccccctcttctgttcaattttttttggtgcgtttctgttgctgatgcgcgcgcgt-ttgttctgtggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109120|gb|DV527537.1|DV527537
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|37398604|gb|CF636617.1|CF636617
EST:     -AGCCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAA-GACGCCCCGCAAT                         TTGATT-GTGCTAGGGGC-AGAGGTTTCGCCAAGAAACGCTATGCTGAGA
genomic: AAG-CGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACG-CCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGG-TTCGCCAAGAAACGCTATGCTGAGA
EST: gi|211464729|gb|FL207495.1|FL207495
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|211464737|gb|FL207503.1|FL207503
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|211464734|gb|FL207500.1|FL207500
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|14883663|gb|BI273476.1|BI273476
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|149079698|gb|EE168699.2|EE168699
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|211464740|gb|FL207506.1|FL207506
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|15053622|gb|BI359167.1|BI359167
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|211464732|gb|FL207498.1|FL207498
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|211467266|gb|FL207509.1|FL207509
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|71440546|gb|DR821596.1|DR821596
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|148933462|gb|EC877158.2|EC877158
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|15053623|gb|BI359168.1|BI359168
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|50332541|gb|CO527667.1|CO527667
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|22545768|gb|BU098142.1|BU098142
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|31359359|gb|CD443716.1|CD443716
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGGTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|211462211|gb|FL207488.1|FL207488
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|211464730|gb|FL207496.1|FL207496
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|15313826|gb|BI478973.1|BI478973
EST:     GCANGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|211462214|gb|FL207491.1|FL207491
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|76917038|gb|DV166648.1|DV166648
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: gi|22819549|gb|BU499639.1|BU499639
EST:     GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAAT                         TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttct ... gctgctgcagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG