1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTGGCGGAGGAGGACGGCGCCGCCGGGGACAAGAGCAAGTGGATGAGCACGGCGCAGCTCTGGACGGGCGATTGCGGCCGCGAGGACGCGGAACCAGAGgtacggcacgattcgggcgtcgtttcgatccgtgaactctgagcacgttggtggacggtggtgggcggcggactaaaagtttggagctttgcgatcgcag
species | Zea mays |
transcript | GRMZM2G173882_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGCGCAGCTCTGGACGGGCGATTGCGGCCGCGAGGACGCGGAACCAGAG AAGCAAGACAAGGAGAGGAGCTCGCCTGAGGCCAGGTCTCGCGCCGCCGGCEST: gi|31350353|gb|CD434710.1|CD434710
genomic: CGGCGCAGCTCTGGACGGGCGATTGCGGCCGCGAGGACGCGGAACCAGAGgtacggcacg ... gcgatcgcagAAGCAAGACAAGGAGAGGAGCTCGCCTGAGGCCAGGTCTCGCGCCGCCGGC
EST: CGGCGCAGCTCTGGACCGTAGATTGCGGCCGCGAGGACGCGGAACCAGAG AAGCAAGACAAGGAGAGGAGCTCGCCTGAGGCCAGGTCTCTCGCCGCCGGCEST: gi|31353132|gb|CD437489.1|CD437489
genomic: CGGCGCAGCTCTGGACGGGCGATTGCGGCCGCGAGGACGCGGAACCAGAGgtacggcacg ... gcgatcgcagAAGCAAGACAAGGAGAGGAGCTCGCCTGAGGCCAGGTCTCGCGCCGCCGGC
EST: CGGCGCAGCTCTGGACGGGCGATTGCGGCCGCGAGGACGCGGAACCAGAG AAGCAAGACAAGGAGAGGAGCTCGCCTGAGGCCAGGTCTCGCGCCGCCGGC
genomic: CGGCGCAGCTCTGGACGGGCGATTGCGGCCGCGAGGACGCGGAACCAGAGgtacggcacg ... gcgatcgcagAAGCAAGACAAGGAGAGGAGCTCGCCTGAGGCCAGGTCTCGCGCCGCCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGCGGAGGAGGACGGCGCCGCCGGGGACAAGAGCAAGTGGATGAGCACGGCGCAGCTCTGGACGGGCGATTGCGGCCGCGAGGACGCGGAACCAGAGgtacggcacgattcgggcgtcgtttcgatccgtgaactctgagcacgttggtggacggtggtgggcggcggactaaaagtttggagctttgcgatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC