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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCGTGGTGGTGGTCGCCGTGGTGGCTATACTGATAGTGAGGCTGGTGATGAGTCTGGTCGCCCCCCTCGCCGGGCCTATGAGCGCCACAGTGGCACAGgtagaggttatggaatgaagtgtgaggtgcgctggccgtggcatctggggaattgtgactgatgaagcccttgcacagttagttcttttttttaaaattatttgtatttgctattctggatgtgtgttgatatggtggattacggaatgtgtaacccttttgtgttctcgaaattatcagag

Basic information

species Zea mays
transcript GRMZM2G173805_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173805_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g41880.1 (Oryza sativa), 5'ss of exon 2
TACCGTGGTGGTGGTCGCCGTGGTGGCTATACTGATAGTGAGGCTGGTGATGAGTCTGGTCGCCCCCCTCGCCGGGCCTATGAGCGCCACAGTGGCACAGgtagaggttatggaatgaagtgtgaggtgcgctggccgtggcatctggggaattgtgactgatgaagcccttgcacagttagttcttttttttaaaattatttgta-tttgctattctggatgtgtgttgatatggtggattacggaatgtgtaacccttttgtgttctcgaaattatcagag
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----------------------------------------------------------------------------CCTATGAACGTCGTAGTGGCACAGGTCGAGGGTATGGGATGAAACGTGAAG-GCGCAGGCCGTGGTAACTGGGGAACTGTGACTGATGAAGCCCTTGCCCAgttaatgctgatatctgaaacttcatattctttggaagtgctatttcatgtttaatgggtttgtttaagttta-atgtttctttttggttttgtgatttgttag--