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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTCGTGCTGATCCGTGCGGAGGACAGCACTCTTGCAGCTCTTTTGGAGTGCGTTCGTTCCATCAGTGCCACTAGAGTGGTTTACAATCGTCTCTACGgtaactgtactagcctgtctgatacaatttttcaggacaactgtttctttttgaaatattttgttttcgaaagcgcttgattcacttggtcctttgatta...

Basic information

species Zea mays
transcript GRMZM2G172152_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76291510|gb|DV031078.1|DV031078
EST:     GTGCGTTCGTTCCATCAGTGCCACTAGAGTGGTTTACAATCGTCTCTACG                         ACCCTATTTCACTTGTGCTTGACAACAAAATCAAGAATGAGCTTCCAGCCC
genomic: GTGCGTTCGTTCCATCAGTGCCACTAGAGTGGTTTACAATCGTCTCTACGgtaactgtac ... tacactgtagACCCTATTTCACTTGTGCTTGACAACAAAATCAAGAATGAGCTTCCAGCCC
EST: gi|91055455|gb|EB165873.1|EB165873
EST:     GTGCGTTCGTTCCATCAGTGCCACTAGAGTGGTTTACAATCGTCTCTACG                         ACCCTATTTCACTTGTGCTTGACAACAAAATCAAGAATGAGCTTCCAGCCC
genomic: GTGCGTTCGTTCCATCAGTGCCACTAGAGTGGTTTACAATCGTCTCTACGgtaactgtac ... tacactgtagACCCTATTTCACTTGTGCTTGACAACAAAATCAAGAATGAGCTTCCAGCCC
EST: gi|50322808|gb|CO517934.1|CO517934
EST:     GTGCGTTCGTTCCATCAGTGCCACTAGAGTGGTTTACAATCGTCTCTACG                         ACCCTATTTCACTTGTGCTTGACAACAAAATCAAGAATGAGCTTCCAGCCC
genomic: GTGCGTTCGTTCCATCAGTGCCACTAGAGTGGTTTACAATCGTCTCTACGgtaactgtac ... tacactgtagACCCTATTTCACTTGTGCTTGACAACAAAATCAAGAATGAGCTTCCAGCCC