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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgctcgatctctttggttcctcgccccaggatgtggagtgatagccgaggaggcttccgtggtttttctgcttgggcttcgttgcttcggtgg...

Basic information

species Zea mays
transcript GRMZM2G172001_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211505025|gb|FL086833.1|FL086833
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505029|gb|FL086837.1|FL086837
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502669|gb|FL086820.1|FL086820
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502678|gb|FL086829.1|FL086829
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505033|gb|FL086841.1|FL086841
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAATGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505030|gb|FL086838.1|FL086838
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTATGCCTTTATGGCTATTCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507391|gb|FL086853.1|FL086853
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507396|gb|FL086858.1|FL086858
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502673|gb|FL086824.1|FL086824
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505024|gb|FL086832.1|FL086832
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502677|gb|FL086828.1|FL086828
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|149042113|gb|EE047091.2|EE047091
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505027|gb|FL086835.1|FL086835
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505031|gb|FL086839.1|FL086839
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507385|gb|FL086847.1|FL086847
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502674|gb|FL086825.1|FL086825
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTCGGGAGGTG
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGT-GGGAGGTG
EST: gi|76921025|gb|DV168421.1|DV168421
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502679|gb|FL086830.1|FL086830
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507386|gb|FL086848.1|FL086848
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507390|gb|FL086852.1|FL086852
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATYCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|78077036|gb|DV505470.1|DV505470
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505028|gb|FL086836.1|FL086836
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507388|gb|FL086850.1|FL086850
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502671|gb|FL086822.1|FL086822
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|71436584|gb|DR817634.1|DR817634
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|22935540|gb|BU571815.1|BU571815
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAAACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502675|gb|FL086826.1|FL086826
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507392|gb|FL086854.1|FL086854
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|71426022|gb|DR807072.1|DR807072
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|71303322|gb|DR787767.1|DR787767
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507393|gb|FL086855.1|FL086855
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|26560007|gb|CA832242.1|CA832242
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAAACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502670|gb|FL086821.1|FL086821
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507394|gb|FL086856.1|FL086856
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|87157435|gb|DY402224.1|DY402224
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAAACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505038|gb|FL086846.1|FL086846
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|78110540|gb|DV528950.1|DV528950
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|74241423|gb|DT649337.1|DT649337
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507395|gb|FL086857.1|FL086857
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|71438530|gb|DR819580.1|DR819580
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|78110698|gb|DV529096.1|DV529096
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|71435348|gb|DR816398.1|DR816398
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|149108563|gb|EE292842.2|EE292842
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211507389|gb|FL086851.1|FL086851
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|94480407|gb|EB709365.1|EB709365
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505032|gb|FL086840.1|FL086840
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|74243375|gb|DT651289.1|DT651289
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211505035|gb|FL086843.1|FL086843
EST:     ATGT-GAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|74237050|gb|DT644964.1|DT644964
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|15177432|gb|BI398386.1|BI398386
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|211502672|gb|FL086823.1|FL086823
EST:     ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA
EST: gi|5555374|gb|AI881325.1|AI881325
EST:     ATGTGGAGAGGTTCTTCAAACTCTGGGACCCCG                         AAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAAACGTGGGAGGTGA
genomic: ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 221

ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGACCTTGCCAGCTGAGGAAGTTCCCCCTGAGATCCCTGAACCAGCATTAGG


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 25

ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGACCTTGCCAGCTGAGGAAGTTCCCCCTGAGATCCCTGAACCAGCATTAGG


Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 46

ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGACCTTGCCAGCTGAGGAAGTTCCCCCTGAGATCCCTGAACCAGCATTAGG


Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 75

ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgc ... ttttgaacagAAAAGGAGAACTTGTGCCTTTATGGCTATCCCGATGAGACGTGGGAGGTGACCTTGCCAGCTGAGGAAGTTCCCCCTGAGATCCCTGAACCAGCATTAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTGgtgagtgcgctcgatctctttggttcctcgccccaggatgtggagtgatagccgaggaggcttccgtggtttttctgcttgggcttcgttgcttcggtgg

- GTGGAG
-  TGGAGA
- -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcgcc