ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

GCAAAGAGGGATTTTACCAAGACTGAAGACGACTTGAAATCTCTGCAGAGCGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccagtgcatttcctgtgtctttggatctgtattcatatacacagtttacaggcttcagattcaattctttcccctcgctataaaggaacacatc...

Basic information

species	Zea mays
transcript	GRMZM2G171604_T01
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G171604_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10640.1 (Oryza sativa), 5'ss of exon 2

GCAAAGAGGGATTTTACCAAGACTGAAGACGACTTGAAATCTCTGCAGAGCGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccagtgcatttcctgtgtct-ttggatctgtattcata----tacacagtttacag-gcttcaga-----ttcaattctttcccctcgctataaaggaacacatc
|| |||| ||| ||||| ||||| ||||| ||||| ||||| ||||| || || ||||| || || |||||||||||||| ||||||||||||||||| ||||||   || ||||||||| | | | ||| || |  || | |     |   || |    |   || ||||       ||| | ||| |  | || ||             
GCTAAGAAGGACTTTACAAAGACCGAAGATGACTTAAAATCCCTGCAAAGTGTTGGGCAGATCATCGGAGAGGTTCTCCGCCCTCTTGATAATGAACGTTgtaagtaaagagcatttcctttttgtgttgaatttacatcctttactttggccactccttatcactacagaaaaatcacaagtatttgcttttgccattt-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211213805|gb|FL354215.1|FL354215

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGC-GAAGTW
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|108954122|gb|EC365012.1|EC365012

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGAATATGTGGTCGG
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGA-TATGTGGTCGG

EST: gi|485586|gb|T18656.1|T18656

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|149076338|gb|EE164954.2|EE164954

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211492303|gb|FL342621.1|FL342621

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|21760157|gb|BQ635698.1|BQ635698

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGCGGTCCCCGATATGTGGTCGGTCTGCCGAAGT
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGT-TGCCGAAGT

EST: gi|148999624|gb|EE036609.2|EE036609

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|149111231|gb|EE294729.2|EE294729

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211365432|gb|FL362341.1|FL362341

EST:     GTGGGGCAAACTAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: GTGGGGCAAA-TAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211064808|gb|FL351653.1|FL351653

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|87157334|gb|DY402123.1|DY402123

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|28910242|gb|CB331341.1|CB331341

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211472283|gb|FL320091.1|FL320091

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211150843|gb|FL322002.1|FL322002

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|149081781|gb|EE170935.2|EE170935

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|26559696|gb|CA831931.1|CA831931

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|148936301|gb|EC880384.2|EC880384

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211465038|gb|FL331926.1|FL331926

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211439881|gb|FL309181.1|FL309181

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211139132|gb|FL349875.1|FL349875

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211093327|gb|FL316665.1|FL316665

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211337754|gb|FL341964.1|FL341964

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|21843335|gb|BQ703916.1|BQ703916

EST:     CGTGGGGCAAATAATTGGAGAGGGTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGGCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|93284400|gb|EB676664.1|EB676664

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211203006|gb|FL329083.1|FL329083

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|6020923|gb|AW065851.1|AW065851

EST:     CTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211342590|gb|FL343872.1|FL343872

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|149080389|gb|EE169410.2|EE169410

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|148959843|gb|EE153075.2|EE153075

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|148953590|gb|EC898944.2|EC898944

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211500957|gb|FL349225.1|FL349225

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211324258|gb|FL315472.1|FL315472

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|22935727|gb|BU572002.1|BU572002

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|148967099|gb|EE018270.2|EE018270

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211390789|gb|FL311859.1|FL311859

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211325283|gb|FL366955.1|FL366955

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211021609|gb|FL356213.1|FL356213

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211351952|gb|FL331043.1|FL331043

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211090841|gb|FL316182.1|FL316182

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|148942358|gb|EC887376.2|EC887376

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211540112|gb|FL312487.1|FL312487

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|20803091|gb|BQ294141.1|BQ294141

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211280124|gb|FL354645.1|FL354645

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211440219|gb|FL323905.1|FL323905

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211419255|gb|FL320485.1|FL320485

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211524951|gb|FL309212.1|FL309212

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|31358883|gb|CD443240.1|CD443240

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211369961|gb|FL325625.1|FL325625

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211101807|gb|FL362945.1|FL362945

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTC
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTC

EST: gi|148931017|gb|EC873580.2|EC873580

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211528496|gb|FL328398.1|FL328398

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|19822294|gb|BQ048318.1|BQ048318

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|29543670|gb|CB604050.1|CB604050

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211286547|gb|FL312258.1|FL312258

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|67033051|gb|CO461800.1|CO461800

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|148979144|gb|EE026532.2|EE026532

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211112198|gb|FL307984.1|FL307984

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGCACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211043933|gb|FL341754.1|FL341754

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211520277|gb|FL356683.1|FL356683

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|148964792|gb|EC906040.2|EC906040

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211295364|gb|FL325953.1|FL325953

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|26457506|gb|CA829089.1|CA829089

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|149112655|gb|EE191390.2|EE191390

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211100591|gb|FL309393.1|FL309393

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|149100597|gb|EE186683.2|EE186683

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211130576|gb|FL330790.1|FL330790

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211260752|gb|FL356971.1|FL356971

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|211213471|gb|FL339252.1|FL339252

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|149009942|gb|EE041784.2|EE041784

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

EST: gi|511349|gb|T23327.1|T23327

EST:     CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCT                         TTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA
genomic: CGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 876

GCAAAGAGGGATTTTACCAAGACTGAAGACGACTTGAAATCTCTGCAGAGCGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccag ... ttctcttcagTTATTGTGAAGGCCAGCAGTGGTCCCCGATATGTGGTCGGTTGCCGAAGTAAAGTAGACAAGGAGAAGTTGACATCTGGAACTCGTGTTGTACTTGACAT

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 569

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 398

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 631

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAAAGAGGGATTTTACCAAGACTGAAGACGACTTGAAATCTCTGCAGAGCGTGGGGCAAATAATTGGAGAGGTTCTCCGACCTCTTGATAATGAACGCTgtaagcccagtgcatttcctgtgtctttggatctgtattcatatacacagtttacaggcttcagattcaattctttcccctcgctataaaggaacacatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaaca