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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTCCTGATGTTGCAGCGTTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATTGAATGAGgtactttgctacctgttgtcatccactatagaaatatatctgatgacgtgtttgtttaacattaaatacattatccccttttacgcag

Basic information

species Zea mays
transcript GRMZM2G171469_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171469_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 8
GTTATTCCTGATGTTGCAGCGTTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATTGAATGAGgtactttgctacctgttgtcatccactatagaaatatatctgatgacgtgtttgtttaacattaaatacattatccccttttacgcag
| |||| |||||||| |||||||| || ||||| ||||||||  | || ||||| ||||||||||||||     | || || ||||   ||        | |  | ||    |   |  ||  ||||    |||  |||  ||||| |  ||
GCTATTTCTGATGTTACAGCGTTTTCCAGTTGAATCAAAAGGAAGGCGTAAAAAGTTGAATGAGgtact-----atcttttatcattggcttctattccagaattaatactttagataatttgcatttctaacac-atctactttttcatag