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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGTTGCCAAATGCCTAAGGTCTGTGACCTGTATTGCGACGGTGGAATGGATACAGACAAGTGGTGTGATGCCCAGGTTGGCCACTACATAGGCATCGgtaggctgcctttcactagcctcagccctctatgatctcttggttacactctcaacaaattaatttgattatttctataacag

Basic information

species Zea mays
transcript GRMZM2G171410_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171410_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g54000.1 (Oryza sativa), 5'ss of exon 3
ATTGGTTGCCAAATGCCTAAGGTCTGTGACCTGTATTGCGACGGTGGAATGGATACAGACAAGTGGTGTGATGCCCAGGTTGGCCACTACATAGGCATCGgtaggctgcctttcactagcctcagcc-ctctatgatctc-ttggtta--cactctcaacaaatt----aatttgattatttctataacag
                     ||||||||||||||||| || |||||  | ||||||||||||||| | ||||| ||  |||| ||||||||||| || |||||| |   |  ||||||||| |||| ||| ||| |  | |||  ||  |  |||    || ||    ||  |  |  |||||| || ||
---------------------GTCTGTGACCTGTATTGTGATGGTGGGGTTGATACAGACAAGTGGGGCGATGCACAAATTGGTCACTACATAGGGATTGgtaggataattcacactagcctaagcctctccatggttacattgtctagtctgtcttgttaatttgacgaacatactactttctacaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71770274|gb|DR968211.1|DR968211
EST:     GGATACAGACAAGTGGTGTGATGCCCAGGTTGGCCACTACATAGGCATCG                         ATGCCTCTGCATCGGGTGTCAACTATGCCCGTGAGCTATGGGAGAACAGGA
genomic: GGATACAGACAAGTGGTGTGATGCCCAGGTTGGCCACTACATAGGCATCGgtaggctgcc ... tctataacagATGCCTCTGCATCGGGTGTCAACTATGCCCGTGAGCTATGGGAGAACAGGA