1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTCAACCTGCAACAAATGCTCCAACTACTGGTTCAGAATCGACAACTGGAACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttgaatacttgtactggttaagtttttttttttgactgggtttgttgtgatgtttatgtgttgtcttttgtgtttgcctacttaaatcaccag
species | Zea mays |
transcript | GRMZM2G170843_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATG CTGGGAGTGCACAAGGTGCAACACGGACTCCTAGTGGCAATGCAAGAACTGEST: gi|32837431|gb|CD977109.1|CD977109
genomic: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttg ... aaatcaccagCTGGGAGTGCACAAGGTGCAACACGGACTCCTAGTGGCAATGCAAGAACTG
EST: AACCCAAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATG CTGGGAGTGCACAAGGTGCAACACGGACTCCTAGTGGCAATGCAAGAACTGEST: gi|32837421|gb|CD977099.1|CD977099
genomic: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttg ... aaatcaccagCTGGGAGTGCACAAGGTGCAACACGGACTCCTAGTGGCAATGCAAGAACTG
EST: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATG CTGGGAGTGCACAAGGTGCAACACGGACTCCTAGTGGCAATGCAAGAACTGEST: gi|211448815|gb|FL216202.1|FL216202
genomic: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttg ... aaatcaccagCTGGGAGTGCACAAGGTGCAACACGGACTCCTAGTGGCAATGCAAGAACTG
EST: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATG CTGGGAGTGCACAAGGTGCAACACGGACTCCTAGTGGCAATGCAAGAACTG
genomic: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttg ... aaatcaccagCTGGGAGTGCACAAGGTGCAACACGGACTCCTAGTGGCAATGCAAGAACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCAACCTGCAACAAATGCTCCAACTACTGGTTCAGAATCGACAACTGGAACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttgaatacttgtactggttaagtttttttttttgactgggtttgttgtgatgtttatgtgttgtcttttgtgtttgcctacttaaatcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA