Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACGTGGGCCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctggtagacgagaatggggtgatgataaagcccgcgcgttccaccgtgacgctgtgtgattttgttttttggtgctggcacctggcag

Basic information

species Zea mays
transcript GRMZM2G169516_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169516_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g39270.1 (Oryza sativa), 5'ss of exon 2
CTACGTGGGCCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacg------------------tctggtagacgagaatggggtgatg-ataa-agcccgcgcgttccaccgtgacgctgtgtgattttgttttttggtgctggcacctggcag-----------------------------
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | ||| ||||||| | ||||||||| ||||||||                   ||  |   |||| |       |||  | | ||   | | ||   |  | ||    | | ||    |    |    |||     | |                                 
CTACGTGGGGCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGgcacggttcatgcttttttttttcctactctccgaggagcaaacaatgtgtgacagtgtgtgtgtgtgagagagagagagagagagagagccagtgtacgctactctcggatgtgaatttctggaaatttgtggctctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438723|gb|DR819773.1|DR819773
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|148950313|gb|EC895872.2|EC895872
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114541|gb|FL295268.1|FL295268
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAAGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114540|gb|FL295267.1|FL295267
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAGGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|148972168|gb|EE023038.2|EE023038
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|71438048|gb|DR819098.1|DR819098
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114544|gb|FL295271.1|FL295271
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAA                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|94475188|gb|EB704146.1|EB704146
EST:     GGAACATCCTCGAGAAAATCATCTGGGACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211113756|gb|FL295262.1|FL295262
EST:     GAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGC
genomic: GAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTC-GCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGC
EST: gi|71430055|gb|DR811105.1|DR811105
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|149082958|gb|EE172194.2|EE172194
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|149026795|gb|EE046156.2|EE046156
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|94473828|gb|EB702786.1|EB702786
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211116126|gb|FL295296.1|FL295296
EST:     GAACATCCCTCGAGAAA-TCATCTGGAACAGGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCT
genomic: GAACATCC-TCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCT
EST: gi|76926401|gb|DV170844.1|DV170844
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|71442933|gb|DR823983.1|DR823983
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCCAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGG
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGG
EST: gi|211115337|gb|FL295282.1|FL295282
EST:     GAACATCCTCGAGAAA-TCATCTGGAAACA-GGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCC-TGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GAACATCCTCGAGAAAATCATCTGGAA-CAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114546|gb|FL295273.1|FL295273
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAAGAGGCCCCTGTACATGCTGAANGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211113759|gb|FL295265.1|FL295265
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCCAGGTTTCGCAT                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGA
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGA
EST: gi|91870856|gb|EB401117.1|EB401117
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211113752|gb|FL295258.1|FL295258
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAA                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAAGGGTCCCCTTGAGG
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAA-GGGTCCGCTTGAGG
EST: gi|211114550|gb|FL295277.1|FL295277
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114551|gb|FL295278.1|FL295278
EST:     GGAACATCCTCGAGAAAATCGTCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAAGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|71442934|gb|DR823984.1|DR823984
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114549|gb|FL295276.1|FL295276
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTG
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTG
EST: gi|211115345|gb|FL295290.1|FL295290
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGGAG-CCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGC
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGG-AGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGC
EST: gi|211115335|gb|FL295280.1|FL295280
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAAGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114545|gb|FL295272.1|FL295272
EST:     GAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCNGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGC
genomic: GAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTC-GCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGC
EST: gi|211113754|gb|FL295260.1|FL295260
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGNAG-CCCCTGTACATGCTGAAGGGT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGG-AGGCCCCTGTACATGCTGAAGGGT
EST: gi|148990956|gb|EE032385.2|EE032385
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|71324172|gb|DR798789.1|DR798789
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114547|gb|FL295274.1|FL295274
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|71318677|gb|DR796095.1|DR796095
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|24765189|gb|CA400348.1|CA400348
EST:     GACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|71433348|gb|DR814398.1|DR814398
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211115341|gb|FL295286.1|FL295286
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGC
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGC
EST: gi|148959576|gb|EC905536.2|EC905536
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211501403|gb|FL138829.1|FL138829
EST:     GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
genomic: GGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTGAGGCTGCT
EST: gi|211114542|gb|FL295269.1|FL295269
EST:     GAACATCCTCGAGAAAATCATCTGGAAACA-GGACGTCGAG-TTTCGCAG                         ATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTTTGAG-CTGC
genomic: GAACATCCTCGAGAAAATCATCTGGAA-CAAGGACGTCGAGGTTTCGCAGgcacgtctgg ... cacctggcagATGAAGGAGAGGAGGCCCCTGTACATGCTGAAGGGTCCGCTT-GAGGCTGC