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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCTgtatgtaatctagtctctcttttggattggaacttgggcatggtggtctgctgattctgttagcgacaacacatgctgattcaaaatattcattcagtccaaaatgcctgatcaaatgtttgctttgcttagcacttgtatgatctccctgtcaatatctgtatggaatcactag

Basic information

species Zea mays
transcript GRMZM2G168257_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168257_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g01210.2 (Oryza sativa), 5'ss of exon 2
TGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCTgtatgtaatctagtctctcttttggattggaacttgggcatggtggtctgctgattctgttagcgacaacacatgctgattcaaaatattcattcagtccaaaatgcctgatcaaatgtttgctttgcttagcacttgtatgatctccctgtcaatatctgtatggaatcactag
|| ||||||||||| ||||||||||| ||   ||||||||| ||||||||||||||||||||||||||||||||||  |||||||| || ||| | |||||||   |  | |  | |  ||     |       | |   |  |         | | |   |   |||| |      |  ||    | ||  ||   | |||                                                                         
TGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTgta---accccacgcccctttccccctctctctctcgttttaatttcacttccactataacaataacaatagg-ataggatcttgctgtttgtttcattcaatt-----------------------------------------------------------------------

upper sequence: GRMZM2G168257_T03 (Zea mays), 5'ss of exon 2
lower sequence: EFJ11620 (Selaginella moellendorffii), 5'ss of exon 2
TGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCTgtatgtaatctagtctctcttttggattggaacttgggcatggtggtctgctgattctgttagcgacaacacatgctgattcaaaatattcattcagtccaaaatgcctgatcaaatgtttgctttgcttagcacttgtatgatctccctgtcaatatctgtatggaatcactag
||  |||| ||||| ||    || |||||||||||||||||||| ||  ||||||| ||||| || ||||||| ||| ||| |||| ||| |||| || ||||   |  | |  |   |  | |||     |||  |   | |   || | | |  ||  | |    ||     || | | ||                                                                                            
TGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTACGAGCCGCCAGCGAACGAGCCGTGGACGACAGGGATCTGCGGCTGCGCCGACGACACAGACACTTgta---agccgatccatcccatcggacgtccactccgatttcgatctcagatcagacttgttgttgaaagcttcgcggctgcag-------------------------------------------------------------------------------------------

upper sequence: GRMZM2G168257_T03 (Zea mays), 5'ss of exon 2
lower sequence: EFJ09771 (Selaginella moellendorffii), 5'ss of exon 2
TGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCTgtatgtaatctagtctctcttttggattggaacttgggcatggtggtc-tgctgattctgttagcgacaacacatgctgattcaaaatattcattcagtccaaaatgcctgatcaaatgtttgctttgcttagcacttgtatgatctccctgtcaatatctgtatggaatcactag
||  |||| ||||| ||    || |||||||||||||||||||| ||  ||||||| ||||| || ||||||| ||| ||| |||| ||| |||| || ||||   |  | |  |   |  | |||     |||  |   | |   || |        ||||   || | | |  || | | ||                                                                                            
TGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTACGAGCCGCCAGCGAACGAGCCGTGGACGACGGGGATCTGCGGCTGCGCCGACGACACAGACACTTgta---agccgatccatcccatcggacgtccactccgatttcgatctcatatcagacttgttgttgaaagctc-cgcggctgcag-------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211048968|gb|FL422521.1|FL422521
EST:     CGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCT                         GCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
genomic: CGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCTgtatgtaatc ... gaatcactagGCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
EST: gi|211223074|gb|FL465845.1|FL465845
EST:     GGATCTTCGGATGCACCGATGACCCAGAGACCT                         GCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
genomic: GGATCTTCGGATGCACCGATGACCCAGAGACCTgtatgtaatc ... gaatcactagGCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
EST: gi|71443195|gb|DR824245.1|DR824245
EST:     CGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCT                         GCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
genomic: CGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCTgtatgtaatc ... gaatcactagGCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
EST: gi|71298100|gb|DR785028.1|DR785028
EST:     CGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCT                         GCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
genomic: CGAGCCCTGGACCACCGGGATCTTCGGATGCACCGATGACCCAGAGACCTgtatgtaatc ... gaatcactagGCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
EST: gi|149013706|gb|EE043159.2|EE043159
EST:     ATGCACCGATGACCCAGAGACCT                         GCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG
genomic: ATGCACCGATGACCCAGAGACCTgtatgtaatc ... gaatcactagGCCGAACTGGATTGTTTTGCCCCTGCGTGCTGTTTGGGCGCAACGTTGAGG