Sequence
atgc intronic sequence ATGC exonic sequenceGGTCAGGTGGTACATTATCCCTGAAGAGACTGCAGCAGGAAGGCAGCTGCATAACTTGAGAAGAGAGCTGTATCGTACCAATGATCTTGCAGACATTGAGgtgatcagtgtctttctatgtgtatagttggctctttcacgatttttctttgtttgtccatttgttgtcttaggttctttgtgcttatggcctgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 2
GGTCAGGTGGTACATTATCCCTGAAGAGACTGCAGCAGGAAGGCAGCTGCATAACTTGAGAAGAGAGCTGTATCGTACCAATGATCTTGCAGACATTGAGgtgatcagtgtctttctatgtgtatagttggctctttcacgatttttctttgtttgtccatttgttgtcttaggttctttgtgcttatggcctgtgcag
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GGTAAGATGGTATATTATCCCTGAAGAGACTGCAGCAGGAAGGCAGCCACATAATTTGCGTAGGGAGCTGTACCGCACCAATGATCTTGCAGACATTGAGgtgataagttattttcga-gtgataaattggttcctttggatggtatttttgttcatt-attcattct-----gttccttgcttttatggcttttgcag
upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 5'ss of exon 2
GGTCAGGTGGTACATTATCCCTGAAGAGACTGCAGCAGGAAGGCAGCTGCATAACTTGAGAAGAGAGCTGTATCGTACCAATGATCTTGCAGACATTGAGgtgatcagtgtctttctatgtgtatagttggctctttcacgatttttctttgtttgtccatttgttgtcttaggt-----tctttgtgcttatggcctgtgcag
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GGGGCGTTGGTATATTATCCCTGAAGAGACTGCAGCTGGAAGACAGCCGCATAATCTAAGAAGGGAGCTTTATAGGACAAATGATTTTGCTGACATTGAGgtgat---tttccttttttgtctatgatattttatttcctagtatacaatgcaataaacgaggcctggaataaaagtaaatttctatgttatgagtatgtgct-
upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 3
-GGTCAGGTGGTACATTATCCCTGAAGAGACTGCAGCAGGAAGGCAGCTGCATAACTTGAGAAGAGAGCTGTATCGTACCAATGATCTTGCAGACATTGAGgtgatcagtgtctttctatgtgtatagttggctctttcacgatttttctttgtttgtccatttgttgtcttaggttctttgtgcttatggcctgtgcag-----
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TGGGC-GATGGTATATCATCCCTGAAGAGACTGCAGCTGGAAGACAGTCGCATAATCTAAGAAGGGAGCTTTATAGGACAAATGATTTTGCTGACATTGAGgtgat---tttccttttttatctatgatattttatttcctagtatacaatgcaataaacgaggcctggaataaaag-taaatttctatgttatgagtaggtgctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60354629|gb|DN221602.1|DN221602EST: ATAACTTGAGAAGAGAGCTGTATCGTACCAATGATCTTGCAGACATTGAG ATGGAAACAATCCTTAGACATTGTTCTATAATGTGCCCCAAAGACTTTAGG
genomic: ATAACTTGAGAAGAGAGCTGTATCGTACCAATGATCTTGCAGACATTGAGgtgatcagtg ... gcctgtgcagATGGAAACAATCCTTAGACATTGTTCTATAATGTGCCCCAAAGACTTTAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCAGGTGGTACATTATCCCTGAAGAGACTGCAGCAGGAAGGCAGCTGCATAACTTGAGAAGAGAGCTGTATCGTACCAATGATCTTGCAGACATTGAGgtgatcagtgtctttctatgtgtatagttggctctttcacgatttttctttgtttgtccatttgttgtcttaggttctttgtgcttatggcctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT