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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCAATCACAGCTCTCAGTTCTAGATAGTTCTTCGCGGCTTGGACTAAAGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctcaaaatatagctgcattctatatttagacacatgctttcctacattacgaataaatgtaagaataccattgcaggggggaaaagtgtctta...

Basic information

species Zea mays
transcript GRMZM2G167999_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167999_T02 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os12g06810.3 (Oryza sativa), 5'ss of exon 7
TGCTCAATCACAGCTCTCAGTTCTAGATAGTTCTTCGCGGCTTGGACTAAAGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagt-tctcaaaatatagctgcattctatatttagacacatgctttcctacattacgaataaatgtaagaataccattg-caggggggaaaagtgtctta
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TGGCCAATCACAATTTTCAGCGCTAGATAGTTCTTCACGGCTTGGACTAAAACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtatttctaaattcaactgttgtttctttctttctatgtactgttcccctttgctgagggcc--aatgttaccactaacaaaaaaggcatcactaata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87151860|gb|DY396649.1|DY396649
EST:     AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG                         GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: gi|60346411|gb|DN213384.1|DN213384
EST:     AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG                         GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: gi|4298917|gb|AI438830.1|AI438830
EST:     AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG                         GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: gi|19436106|gb|BM952516.1|BM952516
EST:     AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG                         GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: gi|22491095|gb|BU051018.1|BU051018
EST:     AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG                         GTTCTATCCCCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: gi|5901405|gb|AW042505.1|AW042505
EST:     AGCCATGGCAAAAANCAAAGCCATGTATTGAGATATTGTGCAATAACCAG                         GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA