1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AATGCATCGTGTTGGGAGTGCTGGTAACACAGCTGGCTCGACTCGACCGAGAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAGgtatgtttatattaaataagctagctctttcagtttttccctttagatctagcttttcctaggtactctatatacattcgaaacaattcatattccactcaatggcgatgataatgcattcatttctgtttgtttttcag
species | Zea mays |
transcript | GRMZM2G167999_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAG CATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGTEST: gi|22489370|gb|BU049293.1|BU049293
genomic: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAGgtatgtttat ... tgtttttcagCATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGT
EST: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAG CATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGTEST: gi|18384200|gb|BM417399.1|BM417399
genomic: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAGgtatgtttat ... tgtttttcagCATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGT
EST: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAG CATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGTEST: gi|88758366|gb|DY542735.1|DY542735
genomic: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAGgtatgtttat ... tgtttttcagCATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGT
EST: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAG CATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGTEST: gi|60397544|gb|DN230360.1|DN230360
genomic: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAGgtatgtttat ... tgtttttcagCATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGT
EST: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAG CATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGT
genomic: GAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAGgtatgtttat ... tgtttttcagCATTGTGCGGGGATCAATTGCTTGGCTTATCTAGATGGTTCCATATTTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCATCGTGTTGGGAGTGCTGGTAACACAGCTGGCTCGACTCGACCGAGAAAAGAGAAGCGCTTCACATATGTACTCAATGATGCTGATGATAAAAAGgtatgtttatattaaataagctagctctttcagtttttccctttagatctagcttttcctaggtactctatatacattcgaaacaattcatattccactcaatggcgatgataatgcattcatttctgtttgtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT