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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGTTCTCCCGGGAAAAGAGCATCGATGGAGGACTTCTATGAGGCAAGGATAGACGACGTTGACGGAGAGAAAGTTGGAATGTTTGGTGTGTATGATGgtatgtattgcctagtgacatctgaaatcatatcaattcagttggttcttctaatgccagcgctccacgatggcattgatattttcacttataaggtgagcatgttttttctgtttctgtag

Basic information

species Zea mays
transcript GRMZM2G166035_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166035_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 3
GCAAGTTCTCCCGGGAAAAGAGCATCGATGGAGGACTTCTATGAGGCAAGGATAGACGACGTTGACGGAGAGAAAGTTGGAATGTTTGGTGTGTATGATGgtatgtattgcctagtgacatctgaaatcatatcaattcagttggttcttctaatgcca-gcgctccacgatggc-attgatattttca-cttataaggtgagcatgttttttctgtttctgtag
||||| |||||||| |||||| | || |||||||||||||||||  | ||||| |||| |||||| || || | ||||||  | ||||| || | |||||||||||||     |    | |||  ||| | || || |    ||   ||    ||  |  ||     || ||  | | |  |||||| |  || ||   |  |||                    
GCAAGCTCTCCCGGTAAAAGATCTTCTATGGAGGACTTCTATGAAACTAGGATCGACGGCGTTGAAGGGGAAATAGTTGGTCTATTTGGAGTCTTTGATGgtatgtat-----acatgcctctctaattacattaactagtctgtcactgactatatcttgcatgtaacaatttctagttctattttaagtttctagcatatgca--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19350739|gb|BM895271.1|BM895271
EST:     GACGACGTTGACGGAGAGAAAGTTGGAATGTTTGGTGTGTATGATG                         G-CATGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCA
genomic: GACGACGTTGACGGAGAGAAAGTTGGAATGTTTGGTGTGTATGATGgtatgtattg ... gtttctgtagGTCACGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCA
EST: gi|6826953|gb|AW330596.1|AW330596
EST:     TTGACGGAGAGAAAGTTGGAATGTTTGGTGTGTATGATG                         GTCACGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCA
genomic: TTGACGGAGAGAAAGTTGGAATGTTTGGTGTGTATGATGgtatgtattg ... gtttctgtagGTCACGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCA
EST: gi|31359010|gb|CD443367.1|CD443367
EST:     GATAGACGACGTTGACGGAGAGAAAGTTGGAATGTTTGGTGTGTATGATG                         GTCATGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCA
genomic: GATAGACGACGTTGACGGAGAGAAAGTTGGAATGTTTGGTGTGTATGATGgtatgtattg ... gtttctgtagGTCACGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCA