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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccggccccatccaccgaaccaatcgatcgtactttcgcagtttcttgtgagctagggtttctgggattccggatctgattgcttctggttgttgggtggtgcag

Basic information

species Zea mays
transcript GRMZM2G165926_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165926_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 2
CATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccggccccatccaccgaaccaatcgatc-gtactttcgcagtttcttgtgagctagggtttctgggattccggatctgattgcttctggttgttggg--tggtgcag
||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||       | |  |||| || ||||||| |  |   |   |||   || ||  |||||||    ||  ||||||||||| || || |  ||   |||     |||||
CATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgcc-------accgtccgacccgatcgatccgcgcggccttcgttgtgtgcgatttagggttct--gggctccggatctgactgttttttttttcgggggcctttgcag

upper sequence: GRMZM2G165926_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 2
CATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacc---cccggccccatcc-accgaacca-atcgatcgtactttcgcagtttct--tgtgagctagggtttctgggattccggatctgattgc-ttctggttgttgggtggtgcag---------------------------------------------------------------------------
 ||||||||||||||||||||||| ||||| || ||| |||| || || || || || || || || |||| ||| ||||| ||||| || || ||||||||            || || | | |||  |  | |  ||     |  |   || |   | ||||        |      |  || || |  |||  ||   |     || | |                                                                                
TATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAGgtgtgaagtgaaatcctattctatcgattcttaacactcccttatctgtgattgccactttgagtagaaaagttaaatttaacgaatattgttgtgtttcagacaagggtttgaatttatttaattggaggtttaggaaattgcggttgggttcaatttgtgctgattttttttttttcttttgatgatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211424106|gb|FL416822.1|FL416822
EST:     TCCAGGCGCAGG-CGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211184475|gb|FL377616.1|FL377616
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|28987670|gb|CB351750.1|CB351750
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211022764|gb|FL415058.1|FL415058
EST:     CCAGGCGCAGGC-GAATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGNGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211147697|gb|FL418240.1|FL418240
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCYAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211275084|gb|FL386564.1|FL386564
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211113040|gb|FL406956.1|FL406956
EST:     CCAGGCGCAGG-CGATTGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211063824|gb|FL422604.1|FL422604
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211114756|gb|FL427457.1|FL427457
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211187018|gb|FL384708.1|FL384708
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211344022|gb|FL411922.1|FL411922
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211503963|gb|FL378777.1|FL378777
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCAGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211527200|gb|FL395771.1|FL395771
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211232447|gb|FL422709.1|FL422709
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATKGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211527211|gb|FL395782.1|FL395782
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211143208|gb|FL408627.1|FL408627
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211054284|gb|FL399893.1|FL399893
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211148658|gb|FL386501.1|FL386501
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211537119|gb|FL426923.1|FL426923
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211527210|gb|FL395781.1|FL395781
EST:     CCAGGCGCAGGCCGATTGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211307281|gb|FL401385.1|FL401385
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211408195|gb|FL391585.1|FL391585
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211011982|gb|FL416040.1|FL416040
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211263889|gb|FL391944.1|FL391944
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|34391254|gb|CF384482.1|CF384482
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCGAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211449452|gb|FL371660.1|FL371660
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|31664309|gb|CD573034.1|CD573034
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211124056|gb|FL408223.1|FL408223
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211296433|gb|FL375537.1|FL375537
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTKATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211305475|gb|FL415757.1|FL415757
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211316901|gb|FL369687.1|FL369687
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211092224|gb|FL378433.1|FL378433
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211439147|gb|FL388418.1|FL388418
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCNGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211448431|gb|FL421136.1|FL421136
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCNAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACNATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211043017|gb|FL421681.1|FL421681
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCAGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211520750|gb|FL372658.1|FL372658
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211053978|gb|FL385080.1|FL385080
EST:     TCCAGGCGCAGG-CGATGCCGTCAACCTCATCTGMGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211441973|gb|FL416344.1|FL416344
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211429413|gb|FL420679.1|FL420679
EST:     CCAGGCGCAGGCCGACTGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211395632|gb|FL405425.1|FL405425
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|148954523|gb|EC899958.2|EC899958
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211264091|gb|FL400958.1|FL400958
EST:     TCCAGGCGCAGG-CGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211343661|gb|FL392038.1|FL392038
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211126365|gb|FL382914.1|FL382914
EST:     TCCAGGCGCAGGCCGAYGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211436970|gb|FL408932.1|FL408932
EST:     CCAGGCGCAGG-CGATTGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211298705|gb|FL383932.1|FL383932
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCAGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211133670|gb|FL369480.1|FL369480
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211518320|gb|FL387244.1|FL387244
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211120944|gb|FL412610.1|FL412610
EST:     CCAGGCGCAGGCCGATTGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211151582|gb|FL387834.1|FL387834
EST:     CCAGGCGCAGGCCGANTGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|28987468|gb|CB351650.1|CB351650
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211284022|gb|FL376855.1|FL376855
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211430981|gb|FL370244.1|FL370244
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211448437|gb|FL421142.1|FL421142
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCNAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|71419001|gb|DR804614.1|DR804614
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211415553|gb|FL372637.1|FL372637
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211363462|gb|FL398802.1|FL398802
EST:     CCAGGCGCAGGCCGATTGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211204240|gb|FL383409.1|FL383409
EST:     CCAGGCGCAGGCCGATTGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211225557|gb|FL386125.1|FL386125
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCCGGGAAGGGTGT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGG-CCGGGAAGGGTGT
EST: gi|40334578|gb|CK368648.1|CK368648
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211413299|gb|FL391618.1|FL391618
EST:     TCCAGGCGCAGG-CGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211229603|gb|FL380020.1|FL380020
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCAGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGGCCGGGAAGGGTGT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGG-CCGGGAAGGGTGT
EST: gi|211533209|gb|FL395808.1|FL395808
EST:     CCAGGCGCAGGCCGATTGCCGTCAACCTCATCTGCGGMGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211042757|gb|FL410368.1|FL410368
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
EST: gi|211439859|gb|FL422473.1|FL422473
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCAGCGCCAAGACCCAG                         TCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 42 (upstream exon), 12 (downstream exon)
Score: 3

CATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacccccgg ... ggtggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTA




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