1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGACTGGAGGCGAGATTGGCTTGAGCACCTATTTCTCAATGGCCAGGGGAAATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaacttctgtctcttgaatgtttacttggtttttttgtggtattggtctaacattttttttattaccttgctcctcgcag
species | Zea mays |
transcript | GRMZM2G165747_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|31354595|gb|CD438952.1|CD438952
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|211327184|gb|FL127493.1|FL127493
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|211329358|gb|FL127511.1|FL127511
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|211331527|gb|FL127536.1|FL127536
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|32847989|gb|CD987670.1|CD987670
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|211329363|gb|FL127516.1|FL127516
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|211331524|gb|FL127533.1|FL127533
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|28930989|gb|CB334350.1|CB334350
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|32945161|gb|CF049980.1|CF049980
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTCATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
genomic: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaac ... ctcctcgcagCCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGGAGGCGAGATTGGCTTGAGCACCTATTTCTCAATGGCCAGGGGAAATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtcaacttctgtctcttgaatgtttacttggtttttttgtggtattggtctaacattttttttattaccttgctcctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG