1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttacttttcttgatttttttggtacaagtgttaggccctgtttgtaccctctagattatataatccagcttaaataagttaagagacaaacaaac...
species | Zea mays |
transcript | GRMZM2G165195_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|76010550|gb|DT937720.1|DT937720
genomic: AAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|71765371|gb|DR963308.1|DR963308
genomic: AATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: CAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211495220|gb|FL000400.1|FL000400
genomic: CAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttacttttcttgatttttttggtacaagtgttaggccctgtttgtaccctctagattatataatccagcttaaataagttaagagacaaacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG