1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttacttttcttgatttttttggtacaagtgttaggccctgtttgtaccctctagattatataatccagcttaaataagttaagagacaaacaaac...
species | Zea mays |
transcript | GRMZM2G165195_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211490966|gb|FL175568.1|FL175568
genomic: AAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTNATCGTCTTTATEST: gi|76010550|gb|DT937720.1|DT937720
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|91052905|gb|EB163323.1|EB163323
genomic: AATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211496741|gb|FL175598.1|FL175598
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211496733|gb|FL175590.1|FL175590
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTNATCGTCTTTATEST: gi|211496739|gb|FL175596.1|FL175596
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211496731|gb|FL175588.1|FL175588
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|91054729|gb|EB165147.1|EB165147
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211499618|gb|FL175604.1|FL175604
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|148991100|gb|EE032548.2|EE032548
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211496735|gb|FL175592.1|FL175592
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|71765371|gb|DR963308.1|DR963308
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: CAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211512472|gb|FL332432.1|FL332432
genomic: CAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211499621|gb|FL175607.1|FL175607
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493851|gb|FL175583.1|FL175583
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211496742|gb|FL175599.1|FL175599
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|71765372|gb|DR963309.1|DR963309
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211490965|gb|FL175567.1|FL175567
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211496734|gb|FL175591.1|FL175591
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTWAGATCAAGACGTGCTGTTNATCGTCTTTATEST: gi|21331789|gb|BQ487170.1|BQ487170
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211496737|gb|FL175594.1|FL175594
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493849|gb|FL175581.1|FL175581
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493848|gb|FL175580.1|FL175580
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: A-AAATCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211499622|gb|FL175608.1|FL175608
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493850|gb|FL175582.1|FL175582
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAA-CGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493840|gb|FL175572.1|FL175572
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTTATCGTCTTTATEST: gi|211499614|gb|FL175600.1|FL175600
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACAYGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTNATCGTCTTTATEST: gi|211493845|gb|FL175577.1|FL175577
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493842|gb|FL175574.1|FL175574
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211490962|gb|FL175564.1|FL175564
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAA-CGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211499616|gb|FL175602.1|FL175602
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211499626|gb|FL175612.1|FL175612
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|76010551|gb|DT937721.1|DT937721
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493841|gb|FL175573.1|FL175573
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493852|gb|FL175584.1|FL175584
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211499615|gb|FL175601.1|FL175601
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211493843|gb|FL175575.1|FL175575
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATEST: gi|211496730|gb|FL175587.1|FL175587
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTNATCGTCTTTATEST: gi|211493847|gb|FL175579.1|FL175579
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
EST: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttacttttcttgatttttttggtacaagtgttaggccctgtttgtaccctctagattatataatccagcttaaataagttaagagacaaacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaacaa