1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAAACTTGTGTCCGTGATAAAGCAGTTGAATCTCTGTGCCGTATTGGTGCACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggttcatttatagaaagtatttggtgtaatgttattgtaaataaatattccgccattgttactgcatttagtatttgttgatgtgcttttgttg...
species | Zea mays |
transcript | GRMZM2G164352_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|21088918|gb|BQ401231.1|BQ401231
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|22473017|gb|BU037497.1|BU037497
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|211520937|gb|FL382784.1|FL382784
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|32931723|gb|CF036535.1|CF036535
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCGGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|211097514|gb|FL395916.1|FL395916
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGEST: gi|32830645|gb|CD970323.1|CD970323
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|26456172|gb|CA827755.1|CA827755
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|22935744|gb|BU572019.1|BU572019
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAG-GGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|31349427|gb|CD433784.1|CD433784
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|31356642|gb|CD440999.1|CD440999
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|211194221|gb|FL384750.1|FL384750
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|19770363|gb|BQ035084.1|BQ035084
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|211080315|gb|FL423992.1|FL423992
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|32831720|gb|CD971398.1|CD971398
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|213188056|gb|FM186556.1|FM186556
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|32851452|gb|CD991133.1|CD991133
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|211356091|gb|FL413289.1|FL413289
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTEST: gi|211150174|gb|FL390449.1|FL390449
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAACTTGTGTCCGTGATAAAGCAGTTGAATCTCTGTGCCGTATTGGTGCACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggttcatttatagaaagtatttggtgtaatgttattgtaaataaatattccgccattgttactgcatttagtatttgttgatgtgcttttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA