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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACTTGTGTCCGTGATAAAGCAGTTGAATCTCTGTGCCGTATTGGTGCACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggttcatttatagaaagtatttggtgtaatgttattgtaaataaatattccgccattgttactgcatttagtatttgttgatgtgcttttgttg...

Basic information

species Zea mays
transcript GRMZM2G164352_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211456531|gb|FL403806.1|FL403806
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|32831601|gb|CD971279.1|CD971279
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211325293|gb|FL368473.1|FL368473
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|31354796|gb|CD439153.1|CD439153
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|21088918|gb|BQ401231.1|BQ401231
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|22473017|gb|BU037497.1|BU037497
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211456529|gb|FL403804.1|FL403804
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
EST: gi|211520937|gb|FL382784.1|FL382784
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|32931723|gb|CF036535.1|CF036535
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCGGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|31359817|gb|CD444174.1|CD444174
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211040048|gb|FL419089.1|FL419089
EST:     ACAAATGAAGGAAACTGACATTTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTTGGGAGAGTGGTTTACAGCTTCGCGTAT
genomic: ACAAATGAAGGAAACTGACATT-GTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCT-GG-AGAGTGGTTTACAGCT-CGCGTAT
EST: gi|211191765|gb|FL382158.1|FL382158
EST:     ACAAATGAAAGAAACTGACATTGTCGACTGGTTCATTC-AGGTAGTAAAG                         AGGCTAGCAGCTGGAGGGTGGTT-ACCAGCTCCCGGATTCGTCCTGGGGG
genomic: ACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAG-TAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTAC-AGCTCGCGTAT-CGTCCTGTGGT
EST: gi|211197000|gb|FL404857.1|FL404857
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTANGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTNCCTGTGGTC
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTA-GCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGT-CCTGTGGTC
EST: gi|211043183|gb|FL426510.1|FL426510
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211284174|gb|FL388278.1|FL388278
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGGAGAGTGGTTTACAGCTCGCGTATCGTCCCTGTGGTC
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGG-AGAGTGGTTTACAGCTCGCGTATCGTCC-TGTGGTC
EST: gi|6626421|gb|AW257953.1|AW257953
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211094711|gb|FL378462.1|FL378462
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGT
EST: gi|211097514|gb|FL395916.1|FL395916
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
EST: gi|211271876|gb|FL420611.1|FL420611
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGNGGTTTACAGCTCGCGTATCCGTCCTGNGGTCT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATC-GTCCTGTGGTCT
EST: gi|211311210|gb|FL392884.1|FL392884
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211482809|gb|FL425102.1|FL425102
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|31353403|gb|CD437760.1|CD437760
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211273936|gb|FL428374.1|FL428374
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211479150|gb|FL394346.1|FL394346
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211102755|gb|FL409170.1|FL409170
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AAGCTAGCAGCTTGGAGAGTGGTTTACAGCTCGCGTATCG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCT-GGAGAGTGGTTTACAGCTCGCGTATCG
EST: gi|67042213|gb|CO468468.1|CO468468
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|32830645|gb|CD970323.1|CD970323
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211164536|gb|FL393748.1|FL393748
EST:     CACAAATGAAAGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AAGCTAGCAGCTGGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGG-AGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCT
EST: gi|20507114|gb|BQ279491.1|BQ279491
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|26456172|gb|CA827755.1|CA827755
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211303362|gb|FL404497.1|FL404497
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|22935744|gb|BU572019.1|BU572019
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAG-GGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|31354949|gb|CD439306.1|CD439306
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211259260|gb|FL402691.1|FL402691
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGT
EST: gi|211376836|gb|FL401931.1|FL401931
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCCTGGAGAGTGGTTTACAGCTCGCGTATTCGTCCTGTGG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGC-TGGAGAGTGGTTTACAGCTCGCGTAT-CGTCCTGTGG
EST: gi|211313706|gb|FL419279.1|FL419279
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211425983|gb|FL379148.1|FL379148
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211112735|gb|FL370886.1|FL370886
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGA
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGA
EST: gi|31349427|gb|CD433784.1|CD433784
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|5268497|gb|AI770461.1|AI770461
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211116112|gb|FL407718.1|FL407718
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGT
EST: gi|149077511|gb|EE166209.2|EE166209
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211432194|gb|FL427257.1|FL427257
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
EST: gi|211080315|gb|FL423992.1|FL423992
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211223423|gb|FL379982.1|FL379982
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGGAGAGTGGTTTACAGC
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGG-AGAGTGGTTTACAGC
EST: gi|31354876|gb|CD439233.1|CD439233
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|148936826|gb|EC880967.2|EC880967
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|31356642|gb|CD440999.1|CD440999
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211227419|gb|FL371539.1|FL371539
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         ACGCTAGCAGCTGGGAGAGTGGTTTACAGCTCGCGTATCCGTCATGTGGTC
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGG-AGAGTGGTTTACAGCTCGCGTATC-GTCCTGTGGTC
EST: gi|211194221|gb|FL384750.1|FL384750
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211280509|gb|FL386607.1|FL386607
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211403471|gb|FL414958.1|FL414958
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211016642|gb|FL375777.1|FL375777
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCG
EST: gi|211294420|gb|FL383899.1|FL383899
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|19770363|gb|BQ035084.1|BQ035084
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211136655|gb|FL389958.1|FL389958
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAG
EST: gi|211079510|gb|FL399424.1|FL399424
EST:     CAAATGAAGGAAACTGACATTTGTCGAACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTTGGAAGAGTGGTTTACAGCTCGCGTATCCGTCCTGTGGT
genomic: CAAATGAAGGAAACTGACATT-GTCGA-CTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCT-GGA-GAGTGGTTTACAGCTCGCGTATC-GTCCTGTGGT
EST: gi|211087462|gb|FL386788.1|FL386788
EST:     CAAATGAAAGAAACTGACATTGTCGACTGGGTTCATTC-AGTAGGTAA-G                         AGGCTAGCAGCTTGGAAAGTGGGTTACAGCTCGCGTATCGCTC-TGGTGG
genomic: CAAATGAAGGAAACTGACATTGTCGACTGG-TTCATTCCAGTAG-TAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCT-GGAGAGTGGTTTACAGCTCGCGTATCG-TCCTG-TGG
EST: gi|211416116|gb|FL411167.1|FL411167
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCT-GGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCT
EST: gi|211379186|gb|FL376883.1|FL376883
EST:     CACAAATGAAGGAAACTGACATGGTCGACTGGTTCATTC-AGTAGTAAGG                         AGGCTAGCAGCTGG-GAAGTGGTT-ACCGCTCCCGTATC
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGA-GTGGTTTACAGCTCGCGTATC
EST: gi|211199335|gb|FL397387.1|FL397387
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCC
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCC
EST: gi|32831720|gb|CD971398.1|CD971398
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211122508|gb|FL412642.1|FL412642
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGT
EST: gi|211298702|gb|FL383929.1|FL383929
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|213188056|gb|FM186556.1|FM186556
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211203981|gb|FL374099.1|FL374099
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAG
EST: gi|211259416|gb|FL408761.1|FL408761
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGG-AGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCT
EST: gi|211042047|gb|FL382431.1|FL382431
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAG
EST: gi|211249403|gb|FL378143.1|FL378143
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGGAGAGTGGTTTACAGCTCGCGTATCNGTCCTGTGGTC
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGG-AGAGTGGTTTACAGCTCGCGTATC-GTCCTGTGGTC
EST: gi|149000781|gb|EE038004.2|EE038004
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|31356243|gb|CD440600.1|CD440600
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211107417|gb|FL388557.1|FL388557
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|32851452|gb|CD991133.1|CD991133
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211334204|gb|FL380512.1|FL380512
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCNAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGC-AGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCT
EST: gi|149075394|gb|EE163908.2|EE163908
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211356091|gb|FL413289.1|FL413289
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211150174|gb|FL390449.1|FL390449
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|6564112|gb|AW231734.1|AW231734
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGNTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGG
EST: gi|31361811|gb|CD446168.1|CD446168
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211109344|gb|FL402574.1|FL402574
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTTCGCGTATCGANCTGTGGTCT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCT-CGCGTATCGTCCTGTGGTCT
EST: gi|211026769|gb|FL368582.1|FL368582
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGGAGAGTGGTTTACAGCTCGCGTATCGTCCCTGTGGTC
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGG-AGAGTGGTTTACAGCTCGCGTATCGTCC-TGTGGTC
EST: gi|211019620|gb|FL388977.1|FL388977
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211309607|gb|FL417529.1|FL417529
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|37622060|gb|CF675113.1|CF675113
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAACTTGTGTCCGTGATAAAGCAGTTGAATCTCTGTGCCGTATTGGTGCACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggttcatttatagaaagtatttggtgtaatgttattgtaaataaatattccgccattgttactgcatttagtatttgttgatgtgcttttgttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA