Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattgtttttctagcttgagtagcatggatgaacttatctcaagaaggatagaggctacgaggtaaattttctatgtgatatag

Basic information

species Zea mays
transcript GRMZM2G163473_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g06474.1 (Oryza sativa), 5'ss of exon 2
AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattgttttt---ctagcttgagt--agcatggatgaacttatctcaagaaggatagaggctacgaggtaaattttctatgtgatatag--------
||||||||||||||  ||||||| ||||||||||||||| |  ||||||| ||||||||||| |||||||||||||| | |  || |    | |||| | |  |     |||| | |||| |  |       |  || || |  ||||  |   | ||   | ||         
AAAGCACTTGCAGGATTGAGAAGGATCAATTTAGATGGGTTGAGATGGCGTGTATTTGATGCAAAGGGTCAGgttagcaatccttctgattttgcttcaatttacggaagatgtatttatgtggaatgcaggaatggttatgcagtaagctactt-tgctgtttatgttgatag

upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g15370.1 (Oryza sativa), 5'ss of exon 2
AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattgtttttctagcttgagtagcatggatgaacttatctcaagaaggatagaggctacgaggtaaattttctatgtgatatag
||||||||||||||| ||||||||||||||||||||||  |  ||||||| |||||||| || ||||| |||||||  ||| || | || | |  | | |    | | |  ||  |    |||   |   | | |  || ||  || | | || ||||   
AAAGCACTTGCAGGTTTGAGAAGAATCAATTTAGATGGATTGAGATGGCGTGTATTTGACGCAAAGGGCCAGgttaccattcttctgctggttccaatggttaagctaatgtt--catgggaaatgttttgacca--agctactttgtttgtgcgatag--

upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g15360.6 (Oryza sativa), 5'ss of exon 1
----------------------------AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattgtttttctagcttgagtagcatggatgaacttatctcaagaaggatagaggctacgaggtaaat-tttctatgtgatatag
                            |||||||||||||   ||||||||||||||||||||||  |  ||||| | |||||||| || ||||| |||||||  ||| || |  | | |  ||| |  |     ||  |||      | || ||  || |       ||   ||| | ||||  ||||
TGATAGTGCTGTTGTTTGAACTGAGCAAAAAGCACTTGCAGACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAAGGGCCAGgttaccatttttctagtggttccagttgt-taagcaaa--tattc----atgggtaatggttttttaccaagcctttgtttgtgtgatag

upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0171g00250.t01 (Vitis vinifera), 5'ss of exon 2
AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattgtttttctagcttgagtagcatggatgaacttatctcaagaaggatagaggctacgaggtaaattttctatgtgatatag---------------
||||||||||| || |||||| |||||||||| || ||  | |||||||| ||||||||||| || || |||||| |||| |   || ||   ||| ||  |||| |    |  | |  ||||    | |   ||  | |    | |    |    | | |               
AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgtt-ggatagaagtt-taatatga-taaaatggttattatagtttttagaaaccca-ataatataatgctggtctctactcccttttgggataagaaatgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211065317|gb|FL151272.1|FL151272
EST:     GAATCAATTTARATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068078|gb|FL151284.1|FL151284
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211498775|gb|FL140826.1|FL140826
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|148938736|gb|EC883069.2|EC883069
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|76015937|gb|DT943107.1|DT943107
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211284264|gb|FL053254.1|FL053254
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068072|gb|FL151278.1|FL151278
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068080|gb|FL151286.1|FL151286
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|74241943|gb|DT649857.1|DT649857
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068074|gb|FL151280.1|FL151280
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|37361133|gb|CF602422.1|CF602422
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|19822368|gb|BQ048392.1|BQ048392
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211065321|gb|FL151276.1|FL151276
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|148999745|gb|EE036748.2|EE036748
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|5398715|gb|AI812180.1|AI812180
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068083|gb|FL151289.1|FL151289
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|9731724|gb|BE510476.1|BE510476
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|87156387|gb|DY401176.1|DY401176
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211065316|gb|FL151271.1|FL151271
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|149071926|gb|EE160312.2|EE160312
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|148973081|gb|EE024144.2|EE024144
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|19770416|gb|BQ035137.1|BQ035137
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068084|gb|FL151290.1|FL151290
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211284263|gb|FL053253.1|FL053253
EST:     TTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: TTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|60349978|gb|DN216951.1|DN216951
EST:     GTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|149083441|gb|EE172763.2|EE172763
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|32907178|gb|CF011991.1|CF011991
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGTTGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068076|gb|FL151282.1|FL151282
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211065322|gb|FL151277.1|FL151277
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068086|gb|FL151292.1|FL151292
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAGGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068085|gb|FL151291.1|FL151291
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|60344047|gb|DN211020.1|DN211020
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|22713642|gb|BU197415.1|BU197415
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|60395778|gb|DN228648.1|DN228648
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|26559331|gb|CA831566.1|CA831566
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211070812|gb|FL151294.1|FL151294
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211070811|gb|FL151293.1|FL151293
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|149077053|gb|EE165709.2|EE165709
EST:     AATCAA-TTAGATGGGGTTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: AATCAATTTAGAT-GGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|148973082|gb|EE024145.2|EE024145
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211468041|gb|FL459168.1|FL459168
EST:     CAATTTAGATGGGCTTCGATGCCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGA-TGGCTTTCCCAAATAGCCGTTGTGCTTCAGGGCAAGGA
genomic: CAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGC-TTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGA
EST: gi|74237945|gb|DT645859.1|DT645859
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|32858018|gb|CD997699.1|CD997699
EST:     ATCAATTTAGATGGGCTTCGATGGCGCGTATTNNTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: ATCAATTTAGATGGGCTTCGATGGCGCGTATT--TGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068073|gb|FL151279.1|FL151279
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|78118041|gb|DV536428.1|DV536428
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|37400998|gb|CF637860.1|CF637860
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068075|gb|FL151281.1|FL151281
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|149077054|gb|EE165710.2|EE165710
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211065315|gb|FL151270.1|FL151270
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|56382613|gb|CV985282.1|CV985282
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|76928535|gb|DV171658.1|DV171658
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|211068079|gb|FL151285.1|FL151285
EST:     GAATCVATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
EST: gi|78105659|gb|DV524077.1|DV524077
EST:     GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAG                         GTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT
genomic: GAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 336

AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGATAAACCGACCTATGCGCCACATGTGGAAAATGGAGACATGTGCATTGTAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 220

AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGATAAACCGACCTATGCGCCACATGTGGAAAATGGAGACATGTGCATTGTAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 190

AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGATAAACCGACCTATGCGCCACATGTGGAAAATGGAGACATGTGCATTGTAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 178

AAAGCACTTGCAGGTCTGAGAAGAATCAATTTAGATGGGCTTCGATGGCGCGTATTTGATGCTAAGGGTCAGgttaggattg ... tgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGATAAACCGACCTATGCGCCACATGTGGAAAATGGAGACATGTGCATTGTAC