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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTCACTATCTGTAACATACAATGAGCCATGGTTTAAGAACACAAGATACTTTTGGATAGGCCCTGGTGACCAGATCTGGCCTGATCAAAAGATAAAgtaagaaagcatgtcttctcttgctcttccaaattatgtttccccccaagaagatccatcttcaacgttccattttccttcttccag

Basic information

species Zea mays
transcript GRMZM2G163426_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163426_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g20630.1 (Oryza sativa), 5'ss of exon 2
TGCTTTCACTATCTGTAACATACAATGAGCCATGGTTTAAGAACACAAGATACTTTTGGATAGGCCCTGGTGACCAGATCTGGCCTGATCAAAAGATAAAgtaagaaagcatgtcttctcttgctcttccaaattatgtttccccccaagaagatccatcttcaacgttccattttccttcttccag
|||| ||||| |||||||||||||||||||||||||| |||||||| ||| | || ||| | || |||||||| ||||||||||||||||| |||| ||||| ||     |     |    |   | |   ||  | |||||   |  | |   |   | ||    |||   | | |||| || |||
TGCTATCACTGTCTGTAACATACAATGAGCCATGGTTCAAGAACACCAGAAATTTCTGGGTTGGGCCTGGTGAACAGATCTGGCCTGATCAGAAGACAAAgtgagtggaaaaaaaataatctatacctgtgaaa-aggtttctgtcacacagagtttttttttcctgttt--tctaccttattgcag

upper sequence: GRMZM2G163426_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 2
TGCTTTCACTATCTGTAACATACAATGAGCCATGGTTTAAGAACACAAGATACTTTTGGATAGGCCCTGGTGACCAGATCTGGCCTGATCAAAAGATAAAgtaagaaagcatgtcttctcttgctcttccaaattatgtttccccccaag--aagatcc--atcttcaacgttccattttccttcttccag------------
| ||| |  | |||||||||||| |||| ||||||||||  || || ||| |||||||| | ||||| ||   |||| ||||||| ||||||||||| ||||||||    || ||| | |||  | |||    ||||| ||   ||  |   | |||    || |  ||| ||  |     |    ||  |            
TTCTTGCTTTGTCTGTAACATACGATGAACCATGGTTTACAAATACTAGAAACTTTTGGGTGGGCCCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagat--tatttctccacttattattctgc-ttatgcttgaaccatatgtatgattttaatttataaccttttaacgaaccaagtcaggcacaagtggtta

upper sequence: GRMZM2G163426_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 2
TGCTTTCACTATCTGTAACATACAATGAGCCATGGTTTAAGAACACAAGATACTTTTGGATAGGCCCTGGTGACCAGATCTGGCCTGATCAAAAGATAAAgtaagaaagcatgtcttctcttgctcttccaaattatgtttccccccaagaagatccatcttcaacgttccattttccttcttccag----
| ||| |  ||||||| || ||||||||||| ||||||| |||||| | |||||||||| |||| ||||| || ||||  |||||||||||| | | |||||||||  |    ||    | |    ||  | || | |  | | |   |     | | |  || || |   || |  || ||  ||     
TTCTTGCTTTATCTGTGACTTACAATGAGCCTTGGTTTATGAACACTAAATACTTTTGGGTAGGGCCTGGAGATCAGACTTGGCCTGATCAACAAACAAAgtaagagtgttgctcaaggccttactttgtatataaagaattctc--gattttgtgcttgctctacatgatatatatctactctcatgcag

upper sequence: GRMZM2G163426_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 2
TGCTTTCACTATCTGTAACATACAATGAGCCATGGTTTAAGAACACAAGATACTTTTGGATAGGCCCTGGTGACCAGATCTGGCCTGATCAAAAGATAAAgtaagaaa---gcatgtcttctctt----gctcttccaaattatgtttc--cccccaagaagatccatcttcaacgttccattttccttcttccag---------------------------------------------
| ||  | ||||||||||| ||  ||||||| |||||||  ||||||| ||| |||||| |||| |||||| | ||  |||||||||| ||| |||| |||||||       || | | |   ||    |||  |     |||  ||    |      |       | |||   | ||    | | |||     ||                                             
TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttcacaagccatacattaaaagcttatggttgttaaattctggcttttgtgttagcttaactttttcctttagctgtgctttgaatagctcagcctatgaagtcagttgagtgatgatatattgcaaattcag