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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGCGGCCGTTCCCGGTGGTACGCGCGGCTGAGACCGACGCCAAAAACGgtgcgtgcttgtcccggcccctccgtgtgctgttctgctcttttccgttgctctctctaactcttttgacgcgtgattgattggttgcacag

Basic information

species Zea mays
transcript GRMZM2G162672_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149038823|gb|EE155536.2|EE155536
EST:     GAGGCGGCCGTTCCCGGTGGTACGCGCGGCTGAGACCGACGCCAAAAACG                         CGAAGGCGAACGCCAAGGCCCCGAATAAGGCACCCGCGGCGGATGGCTCCA
genomic: GAGGCGGCCGTTCCCGGTGGTACGCGCGGCTGAGACCGACGCCAAAAACGgtgcgtgctt ... ggttgcacagCGAAGGCGAACGCCAAGGCCCCGAATAAGGCACCCGCGGCGGATGGCTCCA
EST: gi|61119511|gb|DN560472.1|DN560472
EST:     GAGGCGGCCGTTCCCGGTGGTACGCGCGGCTGAGACCGACGCCAAAAACG                         CGAAGGCGAACGCCAAGGCCCCGAATAAGGCACCCGCGGCGGATGGCTCCA
genomic: GAGGCGGCCGTTCCCGGTGGTACGCGCGGCTGAGACCGACGCCAAAAACGgtgcgtgctt ... ggttgcacagCGAAGGCGAACGCCAAGGCCCCGAATAAGGCACCCGCGGCGGATGGCTCCA
EST: gi|149080582|gb|EE169625.2|EE169625
EST:     GAGGCGGCCGTTCCCGGTGGTACGCGCGGCTGAGACCGACGCCAAAAACG                         CGAAGGCGAACGCCAAGGCCCCGAATAAGGCACCCGCGGCGGATGGCTCCA
genomic: GAGGCGGCCGTTCCCGGTGGTACGCGCGGCTGAGACCGACGCCAAAAACGgtgcgtgctt ... ggttgcacagCGAAGGCGAACGCCAAGGCCCCGAATAAGGCACCCGCGGCGGATGGCTCCA