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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatttatttcgattcgtctattattattgccttcgataatatatactagctagtagtaaatcattccaatgcatgcatgcatgcag

Basic information

species Zea mays
transcript GRMZM2G162200_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g47970.1 (Oryza sativa), 5'ss of exon 4
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatttatttcgattcgtctattattattgccttcgataatatatactagctagtagtaaatca--ttccaatgcatgcatgca--tgcag
| || ||||||||||| || |||||||||||||||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| |||| ||  ||       |||||| |    || || |||            ||| |||| ||| || |  |||    || ||| | | | | | |  | |||
TCCCCAACATCAAGGTCCCACTCATCCTGGGTATCTGGGGAGGCAAGGGTCAGGGAAAATCCTTCCAGTGTGAGCTCGTCTTCGCCAAGATGGGGATCAAgttagtatgaac-tttcgaattaattagtagtat-----------gtatgtacttgcttgttgctaattgacttacaacgtacgtacgtacttacag

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA03G12070.2 (Glycine max), 5'ss of exon 3
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgtt-aatttatttcgattcgtctattattattgccttcgataatatatactagctagtagtaaatcattccaatgcatgcatgcatgcag-------
||||||| || ||||| || || ||  ||||||| |||||||||||||| ||||| ||||| || ||||| ||||| ||||| ||||||||||| |||| ||| ||| ||||   ||| | | || |||| |       || || ||  || |      |  | |  |   ||    |      |||  | |||       
TGCCAAATATTAAGGTCCCTCTTATTTTGGGTATTTGGGGAGGCAAAGGTCAGGGGAAATCATTTCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAAgtaagtttaattccattccaat-gtgtattttcccccatttggaaaacttaaaaggaaaaagattccaaattttgtttaggctaatgtgttcagtttatgg

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G41700.1 (Glycine max), 5'ss of exon 4
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat-ttatttcgattcgtctattat----tattgc-cttcgataatatatactagc-tagtagtaaatc-attccaatgcatgcatgcatgcag
              ||||| ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||||| |||| ||  || |||  | | |  ||    ||| ||      |   | | ||  | ||||| | ||    | ||| || || ||| || |  |     | |   | 
--------------GTTCCTCTCATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCCTTCCAATGCGAGCTTGTCTTTGCCAAGATGGGAATCAAgtgagtaaatgctgtatatatattactactacaaaacagaacacatcagttatatacattactacattagcaactctattgcattagaacttagtaccta-

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G34230.1 (Glycine max), 5'ss of exon 4
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatt--tatttcgattcgtctattattattgccttcgataatatatactagctagtagtaaatcattccaatgcatgcatgcatgcag-----
              ||||| ||||| || ||||||||||||||||| || || |||||||| |||||||| ||||| ||||| ||||||||||| |||| ||  |||  ||  |         | || |||||       ||  | ||  |    ||| |  |   ||| ||     |   ||      |   |      
--------------GTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAAgtgagtttcttgctgaactagcccctccattatgtgcatttttcaaaaattcagttagatcatccaaaaccacattgaaatatcagcaaacataatttta

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G04080.1 (Glycine max), 5'ss of exon 5
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatttatttcgattcgtctatt-attat-tgccttcgataatatatactagctagtagtaaatcattccaatgcatgcatgcatgcag------
             |||||| ||||| || ||||||||||||||||| || || |||||||| |||||||| ||||| ||||| ||||||||||| |||| ||  |||  | ||  |  | | | |  |  ||||| ||| ||     ||  |   ||| |  |   ||| ||     |   ||     ||   |       
-------------GGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAagtgagtt--tctagctgaactagcccctccattatgtgcatttttagattcacgttagttcatccaaaaccacattgaaatatcagctcagctaatgtaat

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G07270.1 (Glycine max), 5'ss of exon 4
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat-ttatttcgattcgtctattat-tattgccttcgataatatatactagctagta-gtaaatcattccaatgcatgcatgcatgcag----
              ||||| ||||| || ||||| |||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||||| |||| ||  || ||| || | |  ||    ||| ||  ||         || |  ||||     || ||  | |   | || | |||||     | |        
--------------GTTCCTCTCATTCTTGGTATTTGGGGAGGCAAAGGTCAAGGAAAATCCTTCCAATGCGAGCTCGTCTTTGCCAAGATGGGAATCAAgtgagtaaatgttgtatatatattactactacataacagaacacatcagttatatacattactacattagcaactctagtgcattagaacttagtactta

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT2G39730.3 (Arabidopsis thaliana), 5'ss of exon 4
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatttatttcgattcgtctattattattgccttcgataatatatactagctagtagtaaatcattccaatgcatgcatgcatgcag
              ||||| || ||  ||||||| |||||||||||||| || || ||||| ||||| || ||||| ||| | ||||||||||| |||| ||  ||  ||||    | | ||  | ||  | |     ||      ||  |          |  ||   |    | |       |   |||||
--------------GTTCCACTTATTTTGGGTATATGGGGAGGCAAAGGTCAAGGTAAATCCTTCCAGTGTGAGCTTGTCATGGCCAAGATGGGTATCAAgtgagtccattt--cccaaatctccgatcttgacccggtttctgtttagctctctttcgacaagaatctaaaaaagtttgaatctttttgcag

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv08s0007g00840.t01 (Vitis vinifera), 5'ss of exon 4
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaa-----tttatttcgattcgtctattattattgccttcgataatatatactagctagt--agtaaatcattccaatgcatgcatgcatgcag---------------------------------------------------------------------------------------------------
              ||||| |||||| ||||||| |||||||| ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| |||| ||  ||| |     ||| ||    || ||  ||  || ||   |   || ||   |   |  | ||   | ||||    | ||    || |   || | |                                                                                                   
--------------GTTCCTCTCATCTTGGGTATTTGGGGAGGTAAAGGTCAGGGAAAATCATTCCAGTGCGAGCTAGTGTTTGCCAAAATGGGGATCAAgtgagttcactctcttttttctattttgtgcatggtttttttttattattattattgtaatatggtctgggaaattgcacaaaattttgaaattattctgggagaaaatgcctaatcaggacatagtgaaaatttaaagttttggcttgcatgttttgctcatgctgactctttgatcttattggcaatgaaattccag

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0019g02050.t01 (Vitis vinifera), 5'ss of exon 4
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatttatttcgattcgtctattattattgccttcgataatatatactagctagtagtaaatcattccaatgcatgcatgcatgcag
              |||||||||||||| ||||| |||||||||||||| ||||| || || ||||| || ||||| |||||  |||||||||| |||| ||  ||| ||   ||  ||    |  |    | |    |  ||  |||| ||   | |   | |  || ||   | | ||             
--------------GTTCCCCTCATCCTTGGTATTTGGGGAGGCAAAGGTCAGGGGAAGTCTTTCCAGTGTGAGCTTGTCTTTTCCAAGATGGGAATCAAgtgagttcatgatttcaga---attcaaaggtctcttataggaggatatgtatatgttttgacttgataatgaaatttcag------------

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0004g05180.t01 (Vitis vinifera), 5'ss of exon 4
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatttatttcgattcgtctat---tattattgccttcgataatatatactagctagta-gtaaat--cattccaatgca--tgcatgcatgcag
              ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||| || ||||| |||||| | |||||||| |||| ||  |||   | ||||| | | |  | |   | | ||    || |  || || |  |   | |||  |  ||  |||    ||| |  | ||    | |||
--------------GTTCCCCTCATTCTGGGTATTTGGGGAGGCAAAGGTCAGGGGAAATCTTTCCAGTGTGAGCTTGTCTTCTCTAAGATGGGAATCAAgttagtt--ctcatttcaacttgcttgtctatttcataatgtttgtgaagatttcttgctttgtacattgatttcatggtgatgaaattccaaattttcag

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S5_83V6.2 (Physcomitrella patens), 5'ss of exon 3
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatttatttcgattcgtctattattattgc-cttcga---taatatatactagct-agtagtaaatcattccaatgcatgcatg------catgcag-------------------------------------------------------------------------------------------
|||||  |||||||||||| || ||||| ||||||||||||||||| || || || || ||||| || |||||||||||| |  | ||| | || |||| ||| || |   | | | ||      | | | | | || |||||    |          || | | ||||  ||   |     ||  |   |      | |||||                                                                                           
TGCCAGGCATCAAGGTTCCTCTGATCCTTGGTATCTGGGGAGGCAAGGGACAAGGGAAGTCGTTTCAGTGCGAGCTGGTCATGTCAAAGCTCGGAATCAAgtaagtgacaatgtgttgagcgtgatttcactgtagcgcttcggaggtggcgagcctcagttgaatagtggatggctagtgggcgcgtcagggggatcgtgcagagacccacgcgctcgtggagggtatccgagtactgaacaatgggaggtgaggaagtcgttactgatcgatgtgcgattgttgcgtgtgcag

upper sequence: GRMZM2G162200_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S244_85V6.1 (Physcomitrella patens), 5'ss of exon 3
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaattta-tttcgattcgtct----attattattgccttcgataatatatactagctagtagtaaatcattccaatgcatgcatgcatgcag--------------------------------------------------------------------------------------
||||    || ||||| || || ||||||||||||||||||||||| || || || ||||||||||||||||| |||||| |  ||||| | ||||||| ||| || |   ||  |||  |  |       |  |  ||| | ||   | |  | |  | | | ||  || |  |  | |||     | ||  ||||                                                                                       
TGCCTGGGATTAAGGTGCCTCTGATCCTGGGTATCTGGGGAGGCAAGGGACAAGGTAAATCGTTCCAATGCGAACTGGTCATGTCCAAGCTCGGCATCAAgtaagtgaccatagcttcagtatgcgggggaagcaagatttcattttcttagttgtcattgat-gttctagacaacactaataagaacctgtttgcaaagccaagaaaaatttctggaaacaattgaaggcgaggtaatgctatttgaaacaatttaacatgattgagatttgcgtgtgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13126634|gb|BG317204.1|BG317204
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|15545696|gb|BI643490.1|BI643490
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGAAGAGCGCCCGCGAGCTGGAGAGCGGCAACGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCC
EST: gi|32921691|gb|CF026503.1|CF026503
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGC
EST: gi|149095830|gb|EE181481.2|EE181481
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|211069486|gb|FL200210.1|FL200210
EST:     AGGGAAAATCGTTCCNATGCGAGCTGGTCTTTCGC-AAGATGGGCATCAC                         CCCCATCATGATGAGC
genomic: AGGGAAAATCGTTCCAATGCGAGCTGGTCTT-CGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGC
EST: gi|148943452|gb|EC888511.2|EC888511
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|15590453|gb|BI675069.1|BI675069
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|13126257|gb|BG316827.1|BG316827
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|211072221|gb|FL200221.1|FL200221
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCCAGATGGGCATCAC                         CCCCATCATGATGAGCGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCC
EST: gi|211069495|gb|FL200219.1|FL200219
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|148994664|gb|EE034185.2|EE034185
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|148939916|gb|EC884636.2|EC884636
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|211072229|gb|FL200229.1|FL200229
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|149105461|gb|EE290977.2|EE290977
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
EST: gi|149100221|gb|EE186283.2|EE186283
EST:     CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCAC                         CCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC
genomic: CAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 2 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 299

TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCCCGCCAAGCTCATCAGGCAGCGCTACCGTGAGGCCTCCGACCTCATCAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 193

TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaat ... atgcatgcagCCCCATCATGATGAGCGCCGGCGAGCTGGAGAGCGGCAACGCCGGAGAGCCCGCCAAGCTCATCAGGCAGCGCTACCGTGAGGCCTCCGACCTCATCAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCAAACATCAAGGTTCCCCTCATCCTGGGTATCTGGGGAGGCAAAGGCCAGGGAAAATCGTTCCAATGCGAGCTGGTCTTCGCCAAGATGGGCATCACgtacgttaatttatttcgattcgtctattattattgccttcgataatatatactagctagtagtaaatcattccaatgcatgcatgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG