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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTTAGTCCTTCGGTTCACCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaccatccatgttccag

Basic information

species Zea mays
transcript GRMZM2G161649_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161649_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTTAGTCCTTCGGTTCACCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaccatccatgttccag
|||||||||||||| |||||||| || || || |  || ||||| ||  | ||||||||||||||||||||||||||    || |     ||  |       || | ||||             ||| |  ||  ||||| |||| | |  |  || | |||
GTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGgtaagtggtcgagtgataattaagc----atatactta------------gatcaatagtcaattggttaataaactgctctgctgcag

upper sequence: GRMZM2G161649_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTTAGTCCTTCGGTTCACCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaa---ccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaccatccatgttccag
||||| ||||||||||| || || ||||||||||  |||||||||||  | |||||||||||||||||||| |||| ||| ||  | ||      |  || |   ||  |  ||||        | ||| |  |||   || | |                    
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag---------------