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GCTAGCAAAAATGCTGTTGAATGAAGGCCAGATTCACCTGTTCGAACACTGGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAGgtgtgtattcaaactcagaacacatagtgcaatgtagtttcataaaaatatatattttctatgttctacaaatgttttataacaaaagtgttagtaaaat...
species | Zea mays |
transcript | GRMZM2G161493_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCTGAACCAGGTGTCGATGATTGACAATAAAAGAGGCTTCTTTGATCAG GTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAGEST: gi|211166798|gb|FK981052.1|FK981052
genomic: GCCTGAACCAGGTGTCGATGAT-GACAATAAAAGAGGCTTCTTTGATCAGgtgtgtattc ... attatcttagGTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAG
EST: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAG GTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAGEST: gi|101392806|gb|EB818334.1|EB818334
genomic: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAGgtgtgtattc ... attatcttagGTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAG
EST: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAG GTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAGEST: gi|74232322|gb|DT640236.1|DT640236
genomic: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAGgtgtgtattc ... attatcttagGTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAG
EST: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAG GTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAGEST: gi|78078951|gb|DV507363.1|DV507363
genomic: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAGgtgtgtattc ... attatcttagGTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAG
EST: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAG GTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAGEST: gi|211166797|gb|FK981051.1|FK981051
genomic: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAGgtgtgtattc ... attatcttagGTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAG
EST: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAG GTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAG
genomic: GGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAGgtgtgtattc ... attatcttagGTTCGCCGACTTAATTCAAGCTATCCTGGAGGTCTGGTATCTTACATCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGCAAAAATGCTGTTGAATGAAGGCCAGATTCACCTGTTCGAACACTGGCCTGAACCAGGTGTCGATGATGACAATAAAAGAGGCTTCTTTGATCAGgtgtgtattcaaactcagaacacatagtgcaatgtagtttcataaaaatatatattttctatgttctacaaatgttttataacaaaagtgttagtaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaag